Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30407
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z54271-8|CAA91038.1|  185|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical
           protein C01B9.1b protein.
          Length = 1671

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 129 FKFKIRRKYPNKNFFTYLNDVNSIEVQLKTS 221
           FK  ++   PN  FF+ L+ + S  ++LKT+
Sbjct: 779 FKLNLKNHAPNNRFFSILSLIASETIELKTT 809


>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical
           protein C01B9.1a protein.
          Length = 1601

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 129 FKFKIRRKYPNKNFFTYLNDVNSIEVQLKTS 221
           FK  ++   PN  FF+ L+ + S  ++LKT+
Sbjct: 709 FKLNLKNHAPNNRFFSILSLIASETIELKTT 739


>Z54271-8|CAA91038.1|  185|Caenorhabditis elegans Hypothetical
           protein F21D5.9 protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 66  CIYRGGLFRLS-DIISTIQENHFKFKIRRK 152
           C   G +FRL+ D++  ++ NH K K +RK
Sbjct: 151 CAVCGAVFRLTGDLVQHMRNNHRKSKFKRK 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,250,027
Number of Sequences: 27780
Number of extensions: 206343
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)