Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30407
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63730.1 68418.m07999 IBR domain-containing protein contains ...    27   9.4  
At5g44990.1 68418.m05517 hypothetical protein                          27   9.4  
At1g68640.1 68414.m07843 bZIP family transcription factor (PERIA...    27   9.4  

>At5g63730.1 68418.m07999 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
           domain
          Length = 506

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 234 EYQIKRPYNLITKKNVAR*AKCHLNEINSL 323
           EY  +RPY+++T+  +    K  +NEI+ +
Sbjct: 2   EYDGRRPYSVLTRNEITVKMKKQINEISDI 31


>At5g44990.1 68418.m05517 hypothetical protein
          Length = 350

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/40 (22%), Positives = 24/40 (60%)
 Frame = +3

Query: 48  RQFYYICIYRGGLFRLSDIISTIQENHFKFKIRRKYPNKN 167
           R++Y++  Y   +++++ + ST++ +H K      +P+ N
Sbjct: 259 REYYHLFNYTKDIYQIAGMSSTVKMDHIKQNYYGSFPSIN 298


>At1g68640.1 68414.m07843 bZIP family transcription factor
           (PERIANTHIA) identical to transcription factor
           PERIANTHIA GB:AAD19660 GI:4378757 from [Arabidopsis
           thaliana]
          Length = 452

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 374 GG*TEKILTKSCHDAF*IRHSDQSTCRRLSRDIARIRLVRV 496
           GG    +L  +C D   ++ SDQ T RRL+++    R  R+
Sbjct: 143 GGHQGMLLATNCSDQSNVKSSDQRTLRRLAQNREAARKSRL 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,287,904
Number of Sequences: 28952
Number of extensions: 182828
Number of successful extensions: 304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)