Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30406
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   2.5  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    26   5.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.7  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 287 LNRIKFVRHKXXXXXXPIQSLYFYYAHFCDVTA 385
           L+R+++VR K      PI+S  F + +  DVT+
Sbjct: 584 LSRLRYVRSKSPTPYYPIESSEFGFTNLKDVTS 616


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 255 QDRVVEWAFCLYIFIQMYVIYYWI 184
           QD+++ +     +F+  Y+IY W+
Sbjct: 211 QDKIIFYCGAFLVFVLFYLIYRWL 234


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 225  LYIFIQMYVIYYWIHWSYIH 166
            +YIF+ M++   + ++SYIH
Sbjct: 1494 MYIFVNMFITVVFDNFSYIH 1513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,355
Number of Sequences: 5004
Number of extensions: 49160
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)