Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30406
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)                       27   0.54 
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          29   3.5  

>SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)
          Length = 296

 Score = 27.5 bits (58), Expect(2) = 0.54
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 356 KSRGIGLDYYYYYF 315
           KSR + +DYYYYY+
Sbjct: 252 KSRLLAMDYYYYYY 265



 Score = 23.0 bits (47), Expect(2) = 0.54
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 332 YYYYYFC 312
           YYYYY+C
Sbjct: 289 YYYYYYC 295


>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 195 YYWIHWSYIHFAPHLKIELNISS*YCSKDNGQ 100
           Y + +WS IH  P L++ LNI +    +D G+
Sbjct: 367 YVYGYWSDIHLVPELQLALNIFATGIQEDTGK 398


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,077,450
Number of Sequences: 59808
Number of extensions: 358372
Number of successful extensions: 600
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)