Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30406
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024811-3|AAF60778.1|  209|Caenorhabditis elegans Hypothetical ...    30   1.8  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AC024788-1|AAF60612.2|  235|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AC024811-3|AAF60778.1|  209|Caenorhabditis elegans Hypothetical
           protein Y54E10BL.3 protein.
          Length = 209

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 186 IHWSYIHFAPHLKIELNISS*YCSKDNGQ*SQTGPMHNMHPATE--HSMHTF 37
           IH S   F PH KI++  SS  CS   G   Q G + NM        S+H F
Sbjct: 92  IHKSLFLFLPHTKIDIKRSS-VCSFSLGARRQLGALSNMDAVYNLVESVHVF 142


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 219 IFIQMYVIYYWIHWSYIHF 163
           I + +Y++Y WI   Y HF
Sbjct: 330 ILVSVYILYTWIRTGYAHF 348


>AC024788-1|AAF60612.2|  235|Caenorhabditis elegans Hypothetical
           protein Y46E12A.3 protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 203 MLYITG-FIGHTYILHPTSKLN*IYLLDTVLKTMGNRAKLARCTICTRLQNIVC 45
           ++Y+ G F+G+   +    +LN + LLD +L    N+A  + C+ C     IVC
Sbjct: 141 LIYVDGYFLGNEKTI---VELNDVKLLDNILGKYQNQAPSSVCSECGNRGYIVC 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,420,615
Number of Sequences: 27780
Number of extensions: 274506
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)