Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30406
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    28   5.0  
At4g37990.1 68417.m05368 mannitol dehydrogenase, putative (ELI3-...    27   8.7  

>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 990

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 380 SHHRNVHNKSRGIGLDYYYYYFC 312
           S H+N++  +  +   YYYYY+C
Sbjct: 46  SSHQNLNLVASNLPSSYYYYYYC 68


>At4g37990.1 68417.m05368 mannitol dehydrogenase, putative (ELI3-2)
           identical to GI:16269
          Length = 359

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +2

Query: 44  CILCSVAGCILCIGPVWLYCPLSLEQYQEDIFNSILRWG 160
           C++ S   C  C   +  YCP S++ Y    +++ + +G
Sbjct: 94  CLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYDNTITYG 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,123,297
Number of Sequences: 28952
Number of extensions: 240672
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)