Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30403
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    26   0.31 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   8.8  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 294 FYFFGGVCLLTALYVVLVVPETKKRRID 211
           F+FF   C   AL VV +V   +KRR++
Sbjct: 75  FFFFAICCDFIALIVVNIVHVFRKRRVN 102


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 210 RTLYYFFNLIVPC 222


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 210 RTLYYFFNLIVPC 222


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 210 RTLYYFFNLIVPC 222


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 210 RTLYYFFNLIVPC 222


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 210 RTLYYFFNLIVPC 222


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 336 FFKPVANVVGLYAAFYFFGGVCLLTALY 253
           F + +A  V LY  FY+   +C++  ++
Sbjct: 142 FREYLAEAVQLYFQFYYTYFLCVIVCIF 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,702
Number of Sequences: 336
Number of extensions: 1907
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)