Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30403
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)                  37   0.016
SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    37   0.016
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 28   5.7  
SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4)                     28   7.6  

>SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)
          Length = 124

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = -1

Query: 333 FKPVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 205
           F  +   +G    F+F+G +C++  +++   VPETK + +++I
Sbjct: 37  FLDLLGSIGTSGTFFFYGLICVIAIVFIYKYVPETKNKTLEQI 79


>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = -1

Query: 333 FKPVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 205
           F  + + + +   ++F+GG+  L  L+V++ VPETK + +++I
Sbjct: 452 FVNIEDAITIQGTYWFYGGLSFLGFLFVLMFVPETKGKTLEQI 494


>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 276 RLRRSRKPHRAP-PRSRLA*RTASAGRQRTRTPPWWSPSPCRGTVDTTRNFVRYRHSS 446
           R R  RK  R+P  RSR   + + + R+R+R+P   S +P + +    RN  R++  S
Sbjct: 200 RSRSPRKMLRSPRKRSRTPRKRSRSPRKRSRSPRKGSHTPKKRSRSPRRNSQRHKERS 257


>SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4)
          Length = 770

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 285 RSRKPHRAPPRSRLA*RTASAGRQRTRTPPWWSPSPCRGTV 407
           +S KP   PPR  L  R     R++   PP   P+   G V
Sbjct: 661 KSEKPPLPPPRGPLRGRNGGVHRRKRGKPPGQGPTASDGPV 701


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,835,615
Number of Sequences: 59808
Number of extensions: 217396
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)