Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30403
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   5.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.9  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    22   5.9  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   7.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.8  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   7.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.8  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 273 TRLRRSRKPHRAPPRSR 323
           TRLRR  KP   P  +R
Sbjct: 29  TRLRREAKPEAEPGNNR 45


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 193 RTLYYFFNLIVPC 205


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 193 RTLYYFFNLIVPC 205


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 193 RTLYYFFNLIVPC 205


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 193 RTLYYFFNLIVPC 205


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 193 RTLYYFFNLIVPC 205


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 193 RTLYYFFNLIVPC 205


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 309 PPRSRLA*RTASAGRQRTRTPPWWSPS 389
           PPR     R  S  R+R RTP + S S
Sbjct: 395 PPRQTPPSRKESGRRRRRRTPRYNSVS 421


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 261 RTLYYFFNLIVPC 273


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 261 RTLYYFFNLIVPC 273


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 607 RLIYFHLNLYVPC 569
           R +Y+  NL VPC
Sbjct: 230 RTLYYFFNLIVPC 242


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 273 TRLRRSRKPHRAPPRSR 323
           TRLRR  KP   P  +R
Sbjct: 1   TRLRREAKPEAEPGNNR 17


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 315 VVGLYAAFYFFGGVCLLTALYVVLVVP 235
           ++ +    Y F  V L+T+ +V  V+P
Sbjct: 1   MISMLRCIYLFLSVILITSYFVTPVMP 27


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 390 PCRGTVDTTRNFVRYRHSSDT 452
           P R  V+T  NF+R+ ++  T
Sbjct: 277 PARAIVETLANFMRFYYNPFT 297


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 390 PCRGTVDTTRNFVRYRHSSDT 452
           P R  V+T  NF+R+ ++  T
Sbjct: 148 PARAIVETLANFMRFYYNPFT 168


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 390 PCRGTVDTTRNFVRYRHSSDT 452
           P R  V+T  NF+R+ ++  T
Sbjct: 277 PARAIVETLANFMRFYYNPFT 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,661
Number of Sequences: 438
Number of extensions: 2447
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)