Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30402
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43153| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31) 29 2.9
SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08) 28 6.6
SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_43491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_30605| Best HMM Match : DUF601 (HMM E-Value=1.7) 28 8.8
SB_24810| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34) 28 8.8
>SB_43153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 48.8 bits (111), Expect = 4e-06
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQ 154
LN+ +SDW++KHV P LTP+F DY ++KEI+
Sbjct: 111 LNQGVSDWVQKHVTSNPYIDLTPVFDDYRKHMKEIE 146
>SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)
Length = 836
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 143 KEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSES--SRDLTVSGSSIFKLDP 316
+E ++Y + D SE+E +N+N + + K + + SES + L V+ F +
Sbjct: 354 EECSDDYVFNENDFSELEASQNMNVSNIDGLCKDVSSLTSESIIASSLGVAVGPFFNIRK 413
Query: 317 SKPFSTTPLSSSCNMLGD 370
S SC+ GD
Sbjct: 414 ESLECDAAPSPSCSSFGD 431
>SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 266 IQKKFHFLIFQQDFLFLN*HSFLSQFQSNHHLVHDTLPVFL 144
+ K F ++++ + FL H FL + QS +H T+ L
Sbjct: 298 VAKVFERIVYELFYAFLEKHDFLCKNQSGFRSIHSTMTALL 338
>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 630 KVEFTPIAEENSVFDKRCKVFVKKDGNFV 716
+ + TP A++++VFD C+ KKDG+ V
Sbjct: 243 QTDATPPADKSNVFDSSCEGKWKKDGSLV 271
>SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 515 KSSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDGRC--TSKSRI 640
+S+PS+ +P S ST +N + P+NQ C T+++RI
Sbjct: 535 RSTPSNQSTPSNQTMHSNRSTPSNQSSPSNQRTTSCGLTTRNRI 578
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +2
Query: 107 LTPIFRDYEAYLKEIQEEYHGPDGDCS-EI-ETKKNVNSETKNPVEKSKNGI 256
+TP+ RDY LKE ++ D D S E+ ETKK V ETK V+++K +
Sbjct: 1268 VTPLERDYVTLLKEWVDK----DLDLSKEVNETKKEV-QETKKDVQETKKEV 1314
Score = 28.3 bits (60), Expect = 6.6
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 65 DWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEI-ETKKNVNSETKNPVEK 241
D K VDET + +D + KE+QE D E+ ETKK + ETK V +
Sbjct: 1315 DETKTKVDETKKEV-QETKKDVQETKKEVQETKTKVDETNKEVQETKKEI-QETKKDVHE 1372
Query: 242 SKNGIFSESSRDL 280
K G SE + DL
Sbjct: 1373 VK-GKVSEMAVDL 1384
>SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)
Length = 1185
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -3
Query: 258 KIPFFDFSTGFFVSELTFFFVSISEQSPSGP*YSSCISFKYAS*SLNIGVKMHKGVSSTC 79
+ P+F ++G S + F + I + P Y SC ++++ L I + +H G+SSTC
Sbjct: 791 RAPYFSCASGIS-STCSLFLLCIQASAVRAP-YFSC-AYRHQQYVLLISL-VHTGISSTC 846
Query: 78 FL 73
L
Sbjct: 847 SL 848
>SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 647
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 77 KHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEK 241
+ + E L P+F+D EA KE EE+ D ++ KK+ + EK
Sbjct: 447 REIWEGSLNTTKPVFKDLEAQFKERTEEFEKMKKDVVGLKNKKSSLETSVQRAEK 501
>SB_43491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 463 RSPKREPCAYCWNAIYSACSC 401
R P YCWN I SA SC
Sbjct: 78 RRPNSTTVDYCWNTIISAYSC 98
>SB_30605| Best HMM Match : DUF601 (HMM E-Value=1.7)
Length = 329
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +2
Query: 131 EAYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSESSRDLTVSGSSIFKL 310
EA EI+ H P CS+ +T V S PV K+ + + + S ++ + S +
Sbjct: 99 EATSSEIENPSHVPRDSCSKSQTFNPVRSGV--PVSKNLSNLRKDFSSEILIDTSITIQR 156
Query: 311 DPSKPFSTTPLSSS 352
+ T L+S+
Sbjct: 157 FSNSKIKTCNLTST 170
>SB_24810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 644 CKFYFWRYIFHLPDLRALYYL 582
CKFY Y+F+L DL Y L
Sbjct: 210 CKFYTGVYLFNLDDLEVFYQL 230
>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 125 DYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSESSRD 277
DY++ K + E + P C T+ N+ S +NP + NG SES+ +
Sbjct: 464 DYDSSFKHLLYELN-PALSCCLDTTEDNLISHIENPSKLHSNGRISESTSE 513
>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +2
Query: 107 LTPIFRDYEAYLKEIQEEYHGPDGDCS-EI-ETKKNVNSETKNPVEKSK 247
+TP+ RDY LKE ++ D D S E+ ETKK V ETK V+++K
Sbjct: 172 VTPLERDYVTLLKEWVDK----DLDLSKEVNETKKEV-QETKKEVQETK 215
>SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
Length = 758
Score = 27.9 bits (59), Expect = 8.8
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +2
Query: 125 DYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSESSRDLTVSG-SSI 301
+YE ++E+Q E +C E++ N N ++ V++ G E + DL + G S
Sbjct: 442 EYEGQIRELQNENLDLRKECLELD---NENKILEDEVKQLSEGSTPEGN-DLDIYGRSEK 497
Query: 302 FKLDPSKPFSTTPLSSSCNMLGD 370
LD P S+ L + L D
Sbjct: 498 LCLDDEVPISSCELEAFETRLSD 520
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,116,524
Number of Sequences: 59808
Number of extensions: 362431
Number of successful extensions: 1245
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -