Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30402
(719 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF107840-1|AAD53401.1| 468|Homo sapiens nuclear pore-associated... 74 6e-13
Z82243-1|CAI17926.1| 468|Homo sapiens nucleoporin 50kDa protein. 73 1e-12
CR456533-1|CAG30419.1| 468|Homo sapiens NUP50 protein. 73 1e-12
BC070133-1|AAH70133.1| 468|Homo sapiens nucleoporin 50kDa protein. 73 1e-12
BC028125-1|AAH28125.1| 440|Homo sapiens nucleoporin 50kDa protein. 73 1e-12
BC016055-1|AAH16055.1| 440|Homo sapiens NUP50 protein protein. 73 1e-12
AL008718-1|CAI17944.1| 468|Homo sapiens nucleoporin 50kDa protein. 73 1e-12
BC088365-1|AAH88365.2| 435|Homo sapiens PTD016 protein protein. 30 7.3
AK098649-1|BAC05364.1| 252|Homo sapiens protein ( Homo sapiens ... 30 7.3
AL035425-2|CAB90290.1| 1257|Homo sapiens insulin receptor substr... 30 9.6
AF007567-1|AAC51738.1| 1257|Homo sapiens insulin receptor substr... 30 9.6
>AF107840-1|AAD53401.1| 468|Homo sapiens nuclear pore-associated
protein protein.
Length = 468
Score = 73.7 bits (173), Expect = 6e-13
Identities = 47/130 (36%), Positives = 66/130 (50%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ESS G+ K + + + LG F+FG
Sbjct: 221 SPSLFGSTKLQQESS--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278
Query: 407 TSTINSIPAI 436
+S + S+ ++
Sbjct: 279 SSVLGSLSSV 288
Score = 41.5 bits (93), Expect = 0.003
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 618 DVPPKVEFTPIAEENSVFDKRCKVFVKKDGNF 713
D PPKV T + EE++ + K+CK+F KKD F
Sbjct: 342 DEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEF 373
>Z82243-1|CAI17926.1| 468|Homo sapiens nucleoporin 50kDa protein.
Length = 468
Score = 72.5 bits (170), Expect = 1e-12
Identities = 46/130 (35%), Positives = 66/130 (50%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ES+ G+ K + + + LG F+FG
Sbjct: 221 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278
Query: 407 TSTINSIPAI 436
+S + S+ ++
Sbjct: 279 SSVLGSLSSV 288
Score = 41.5 bits (93), Expect = 0.003
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 618 DVPPKVEFTPIAEENSVFDKRCKVFVKKDGNF 713
D PPKV T + EE++ + K+CK+F KKD F
Sbjct: 342 DEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEF 373
>CR456533-1|CAG30419.1| 468|Homo sapiens NUP50 protein.
Length = 468
Score = 72.5 bits (170), Expect = 1e-12
Identities = 46/130 (35%), Positives = 66/130 (50%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ES+ G+ K + + + LG F+FG
Sbjct: 221 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278
Query: 407 TSTINSIPAI 436
+S + S+ ++
Sbjct: 279 SSVLGSLSSV 288
Score = 41.5 bits (93), Expect = 0.003
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 618 DVPPKVEFTPIAEENSVFDKRCKVFVKKDGNF 713
D PPKV T + EE++ + K+CK+F KKD F
Sbjct: 342 DEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEF 373
>BC070133-1|AAH70133.1| 468|Homo sapiens nucleoporin 50kDa protein.
Length = 468
Score = 72.5 bits (170), Expect = 1e-12
Identities = 46/130 (35%), Positives = 66/130 (50%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ES+ G+ K + + + LG F+FG
Sbjct: 221 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278
Query: 407 TSTINSIPAI 436
+S + S+ ++
Sbjct: 279 SSVLGSLSSV 288
Score = 41.5 bits (93), Expect = 0.003
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 618 DVPPKVEFTPIAEENSVFDKRCKVFVKKDGNF 713
D PPKV T + EE++ + K+CK+F KKD F
Sbjct: 342 DEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEF 373
>BC028125-1|AAH28125.1| 440|Homo sapiens nucleoporin 50kDa protein.
Length = 440
Score = 72.5 bits (170), Expect = 1e-12
Identities = 46/130 (35%), Positives = 66/130 (50%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 135 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 192
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ES+ G+ K + + + LG F+FG
Sbjct: 193 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 250
Query: 407 TSTINSIPAI 436
+S + S+ ++
Sbjct: 251 SSVLGSLSSV 260
Score = 41.5 bits (93), Expect = 0.003
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 618 DVPPKVEFTPIAEENSVFDKRCKVFVKKDGNF 713
D PPKV T + EE++ + K+CK+F KKD F
Sbjct: 314 DEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEF 345
>BC016055-1|AAH16055.1| 440|Homo sapiens NUP50 protein protein.
Length = 440
Score = 72.5 bits (170), Expect = 1e-12
Identities = 46/130 (35%), Positives = 66/130 (50%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 135 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 192
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ES+ G+ K + + + LG F+FG
Sbjct: 193 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 250
Query: 407 TSTINSIPAI 436
+S + S+ ++
Sbjct: 251 SSVLGSLSSV 260
Score = 41.5 bits (93), Expect = 0.003
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 618 DVPPKVEFTPIAEENSVFDKRCKVFVKKDGNF 713
D PPKV T + EE++ + K+CK+F KKD F
Sbjct: 314 DEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEF 345
>AL008718-1|CAI17944.1| 468|Homo sapiens nucleoporin 50kDa protein.
Length = 468
Score = 72.5 bits (170), Expect = 1e-12
Identities = 46/130 (35%), Positives = 66/130 (50%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ES+ G+ K + + + LG F+FG
Sbjct: 221 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278
Query: 407 TSTINSIPAI 436
+S + S+ ++
Sbjct: 279 SSVLGSLSSV 288
Score = 41.5 bits (93), Expect = 0.003
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +3
Query: 618 DVPPKVEFTPIAEENSVFDKRCKVFVKKDGNF 713
D PPKV T + EE++ + K+CK+F KKD F
Sbjct: 342 DEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEF 373
>BC088365-1|AAH88365.2| 435|Homo sapiens PTD016 protein protein.
Length = 435
Score = 30.3 bits (65), Expect = 7.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 392 QKKILLVCLQAYCKNCLMVW 333
QK ILL+C +C+ C+ +W
Sbjct: 383 QKPILLICQHIFCEECMTLW 402
>AK098649-1|BAC05364.1| 252|Homo sapiens protein ( Homo sapiens
cDNA FLJ25783 fis, clone TST06726. ).
Length = 252
Score = 30.3 bits (65), Expect = 7.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 392 QKKILLVCLQAYCKNCLMVW 333
QK ILL+C +C+ C+ +W
Sbjct: 200 QKPILLICQHIFCEECMTLW 219
>AL035425-2|CAB90290.1| 1257|Homo sapiens insulin receptor substrate 4
protein.
Length = 1257
Score = 29.9 bits (64), Expect = 9.6
Identities = 25/72 (34%), Positives = 34/72 (47%)
Frame = -3
Query: 585 FVLVEVNDGAPNLRGEPSEDGLDFNPKEKVFDVCILLEFVDEVPKENPVLIAGMLFIVLV 406
F E N AP+ +G P G+ P++ F + +EF VP NP A L +L
Sbjct: 926 FTKRESNTPAPSTQGLPDSWGIIAEPRQSAFSNYVNVEF--GVPFPNP---ANDLSDLLR 980
Query: 405 AVFIPKENPFGL 370
A IP+ NP L
Sbjct: 981 A--IPRANPLSL 990
>AF007567-1|AAC51738.1| 1257|Homo sapiens insulin receptor substrate 4
protein.
Length = 1257
Score = 29.9 bits (64), Expect = 9.6
Identities = 25/72 (34%), Positives = 34/72 (47%)
Frame = -3
Query: 585 FVLVEVNDGAPNLRGEPSEDGLDFNPKEKVFDVCILLEFVDEVPKENPVLIAGMLFIVLV 406
F E N AP+ +G P G+ P++ F + +EF VP NP A L +L
Sbjct: 926 FTKRESNTPAPSTQGLPDSWGIIAEPRQSAFSNYVNVEF--GVPFPNP---ANDLSDLLR 980
Query: 405 AVFIPKENPFGL 370
A IP+ NP L
Sbjct: 981 A--IPRANPLSL 990
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,784,800
Number of Sequences: 237096
Number of extensions: 1771481
Number of successful extensions: 4800
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4800
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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