Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30400
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ... 104 1e-23
SPBC36.10 |||mitochondrial intermembrane space protein sorting p... 86 5e-18
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.36
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 29 0.48
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 29 0.64
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 27 2.6
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.5
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 5.9
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 26 5.9
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 23 7.7
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 7.9
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 25 7.9
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 25 7.9
>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 104 bits (250), Expect = 1e-23
Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Frame = +3
Query: 177 MTRYFENTSVFNFSWDQVARGYWRRYPNPQSTHVLSEDTWSRQVRD-GCLYTKRLLTKTN 353
MT + + N SW+ V+ + RYPNP S HV+S D R V D G LYT+RLL K
Sbjct: 1 MTAICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDDEGRLYTERLLVKQG 60
Query: 354 RVPKWGERFFNAKSVKIIEESVVDPEKKILVTYTRNLGYTKVMSVVE--RVEYRSAGPGQ 527
R+P+W N I+E SV+DP K+ L + T NL + K++ V+E R S +
Sbjct: 61 RLPRWASDLLNVNKSYILERSVIDPSKQELKSETFNLDHVKILRVIEYSRFIQSSENCSK 120
Query: 528 TVAKRSA-WIDSQVFGFSRAIRAFGIERFKKNCSQMASGFNHVLHSMY 668
T+ A ++ FG R ++ + ++RF++ S G +V+ +
Sbjct: 121 TIVDTIAKFVSPLRFGLGRRVQKYSLKRFQEQLSSSRRGLLYVIQQKF 168
>SPBC36.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 85.8 bits (203), Expect = 5e-18
Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 6/167 (3%)
Frame = +3
Query: 183 RYFENTSVFNFSWDQVARGYWRRYPNPQSTHVLSEDTWSRQVRD-GCLYTKRLLTKTNRV 359
+ FE+ +F + ++QV+ +W++YPN +THV++ DT R+V D G LYT+RL+T +
Sbjct: 2 KIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKVLDNGVLYTERLITCHQAL 61
Query: 360 PKWGERFFN-AKSVKIIEESVVDPEKKILVTYTRNLGYTKVMSVVERVEYRSAGP--GQT 530
P+W + + A+ I E S VD + + L T NL ++ + V E V Y S P T
Sbjct: 62 PRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVTY-SPHPELEAT 120
Query: 531 VAKRSAWIDSQ--VFGFSRAIRAFGIERFKKNCSQMASGFNHVLHSM 665
V ++ A I++ + S I + ++ F K S+ GF VL +
Sbjct: 121 VFQQEARIEALACMKRLSNLIEQWSVDGFGKKASRGKEGFESVLEKI 167
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +1
Query: 547 RGSTRRFSASREPYGHSASKGS----RRTARRWRAGSTTSCTACTRGPRVP 687
R STR+F+ +R P G SAS+ S R ++R + + + ++ +R P P
Sbjct: 47 RSSTRQFNNTRSPSGRSASRSSNFSHRSSSRDSFSSNRSYSSSLSRSPEEP 97
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 526 RPWPSVRRGSTRRFSASREPYGHSASKGSRR 618
RPW + R + R+SAS EP + SRR
Sbjct: 15 RPWTIINRIQSERYSASYEPSPELLKQSSRR 45
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 381 KIFHPILELCWF*SGAALYKDNRLEPVGSMYLQIGREYSAD 259
KI HP C G +YKD++ + G +YL++ E+ D
Sbjct: 308 KILHP--GDCLIIPGEGMYKDSKTDLRGDLYLEVDIEFPKD 346
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +1
Query: 568 SASREPYGHSASKGSRRTARRWRAGSTTS--CTAC 666
+A P+G S S + T WR G S C AC
Sbjct: 2 AAKPAPFGQSCSNCHKTTTSLWRRGPDNSLLCNAC 36
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 193 SKYLVILPFRLQCFLLQLYLVFIPKQKENVLSFQYI*M 80
SKY I +++CF L + IPKQ +++ F + M
Sbjct: 21 SKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILIM 58
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 683 TRGPRVHA-VQDVVEPARHLRAVLLEPFDAECPYGSREAE 567
++G ++ + + D+ E ++HL VLLEP YG + E
Sbjct: 16 SKGSQIESSISDLREKSQHLFGVLLEPQVPVIQYGLNQLE 55
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 496 ELSTGRPARARPWPSVRRGSTRRFSASREPYGHSASKGS 612
+LS+ +P GS R+F+AS++ S SKGS
Sbjct: 212 QLSSSDTLEPLQYPPSSFGSQRQFNASQDSPKRSPSKGS 250
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 23.0 bits (47), Expect(2) = 7.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 585 IRAFGIERFKKNCSQMASGFNHVLHSMY 668
IR G E KKN ++S F+++LH Y
Sbjct: 312 IRNVGYE--KKNLYYISSAFSNLLHCRY 337
Score = 20.6 bits (41), Expect(2) = 7.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 417 VVDPEKKILVTYTRNLGYTK 476
V D E +L + RN+GY K
Sbjct: 300 VKDLENSLLQSNIRNVGYEK 319
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 323 KTTVSNLSAPCIFR*DVSTLRIWVSPPVTTRNLIPTEVKDRSI 195
K T +NL C+ DV ++ +S + P E+KD+ I
Sbjct: 1096 KFTRNNLVGVCVLSVDVPNRKVALSARNSRTQSQPVEIKDKEI 1138
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 162 FNAFYFNYIWSSFQNRRKTSYLFNTS 85
F+ +Y+N I S FQN +K Y+ S
Sbjct: 317 FSDYYYNGIPSYFQNPQKARYMLMLS 342
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 287 RYMEPTGSRRLSLYKA 334
RY PTG + LSLYKA
Sbjct: 83 RYGFPTGEKMLSLYKA 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,019
Number of Sequences: 5004
Number of extensions: 65508
Number of successful extensions: 198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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