Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30400
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0533 - 29818276-29818866 35 0.070
08_01_0462 + 4072369-4072630,4072732-4072814,4072937-4073020,407... 33 0.16
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408... 33 0.22
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 31 0.66
02_02_0488 - 10863248-10863960,10865933-10866269 30 1.5
10_02_0102 + 5314875-5315231 29 3.5
03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689 29 3.5
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 29 4.6
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 29 4.6
09_04_0567 + 18585556-18586113 29 4.6
01_01_0942 + 7428384-7429536,7429623-7430335 29 4.6
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 28 6.1
07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358 28 8.1
02_02_0357 + 9360108-9360754,9363732-9364137 28 8.1
02_02_0355 + 9312814-9313650 28 8.1
01_03_0304 - 14838977-14838988,14839291-14840302,14840414-148406... 28 8.1
>02_05_0533 - 29818276-29818866
Length = 196
Score = 34.7 bits (76), Expect = 0.070
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Frame = +3
Query: 204 VFNFSWDQVARGYWRRYPNPQS----THVLSEDTWSRQV--RDGCLYTKRLLT-KTNRVP 362
V+ WD+V WR++ +P S +HV T R+V G L R +T ++ +P
Sbjct: 9 VYRHPWDRVTAAAWRKFTDPASRTALSHVADVHTLHRRVDPEAGRLQAARSITVRSPPLP 68
Query: 363 KWGERFFNAKS--------VKIIEESVVDPEKKILVTYTRNLGYTKVMSVVERVEYR 509
R A + +E S+VD ++ + RN+ ++ V ER YR
Sbjct: 69 FILRRLLPAAASSPSGAALCHCVETSLVDAPRRAMDVVVRNVSLRGLIEVEERSTYR 125
>08_01_0462 +
4072369-4072630,4072732-4072814,4072937-4073020,
4073509-4073584,4073712-4073784,4073878-4073951,
4074158-4074251,4074374-4074443
Length = 271
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 199 LRSLTSVGIKLRVVTGGDTQIRRVLTSYLKIHGADRFETVV 321
LR L G+KL VV+ DT++R++L +H +D F+ +V
Sbjct: 161 LRDLKDAGVKLAVVSNFDTRLRKLLKD---LHVSDMFDAIV 198
>06_03_0930 -
26038341-26038508,26039114-26039254,26040799-26040858,
26040972-26041034,26041444-26041454,26041722-26041802,
26042783-26043020,26043563-26043997
Length = 398
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +1
Query: 532 WPSVRRGSTRRFSASREPYGHSASKGSRRTARRWRAGSTTS 654
WP+V RG R S R P G GS T RW GS S
Sbjct: 54 WPTVARGKRSRSSRRRSPSG----SGSAATKGRWARGSPAS 90
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 31.5 bits (68), Expect = 0.66
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 493 RELSTGRPARARPWPSVRRGSTRRFSASREPYGHSASKGSRRTARRWRAGSTTSCTACTR 672
R +S R +R+R S+ R +R +S SR P SAS+ R R+ S + R
Sbjct: 201 RSISRSR-SRSR---SISRSRSRSYSRSRSPRSRSASRSHSPVKERSRSASQSRSPVKER 256
Query: 673 GP-RVPP 690
P R PP
Sbjct: 257 SPSRSPP 263
>02_02_0488 - 10863248-10863960,10865933-10866269
Length = 349
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 501 EYRSAGPGQTVAKRSAWIDSQVFGFSRAIRAFGIERFKKNCS 626
EY + GPG VA R AW +V S F + RF S
Sbjct: 293 EYMNYGPGAGVAGRVAWPGHRVINDSAEAERFTVARFISGAS 334
>10_02_0102 + 5314875-5315231
Length = 118
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 502 STGRPARARPWPSVRRGSTRRFSASREPYG-HSASKGSRRTARRWRAGSTTSCTA 663
S+ + R W RRG+ + R P HSA+ +R RRWR T + T+
Sbjct: 8 SSSQAKERREWK--RRGAFSSSLSPRPPRSPHSATTVTRGGRRRWRRSKTATATS 60
>03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689
Length = 328
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +1
Query: 493 RELSTGRPARARPW--PSVRRGSTRRFSASR---EPYGHSASKGSRRTARRWRAGSTTSC 657
++ S P+ RP PS S+R +A+R + H +RR ARRW+A + S
Sbjct: 9 KDKSPSLPSHRRPLFLPSTSIASSRWATAARRRSQAVAHQFQASTRRAARRWQAVARGSQ 68
Query: 658 TACTRGPRVP 687
A P
Sbjct: 69 AAARWSQAAP 78
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 524 PDRGQAFGVDRLAGFRLLASHTGIRHRKVQEELLADGERVQPRPAQHVPAAHESR 688
PDRG++ G DR +G R L+S + R R + R P+ SR
Sbjct: 1220 PDRGRSRGYDRRSGSRSLSSRSRSRSRSWSRSRSRSRSWSRSRSRSRSPSRSRSR 1274
>11_01_0334 +
2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -1
Query: 680 RGPRVHAVQDVVEPARHLRAVLLEPFDAECPYGSREAENLRVDPRRTLGHGLARAGRP 507
RG V +++VEP R +R LLE D P R ++ + LG L R RP
Sbjct: 87 RGVDVLTKENIVEPMRDIRRALLEA-DVSLPVVRRFVSSI---SEKALGSDLIRGVRP 140
>09_04_0567 + 18585556-18586113
Length = 185
Score = 28.7 bits (61), Expect = 4.6
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Frame = +3
Query: 204 VFNFSWDQVARGYWRRYPNPQS-----THVLSEDTWSRQVRDGCLYTKRLLTKTNRVPKW 368
V+ W +V WR++ + + +H+L T SR+V G + R P
Sbjct: 10 VYRHPWHRVTAAAWRKFTDADARAAPLSHILEVHTLSRRVDAGSGRIDAVRAIAGRAPPL 69
Query: 369 GERFFN----AKSVKIIEESVVDPEKKILVTYTRNLGYTKVMSVVERVEYR 509
A V +E + VD + + +RN ++ V E YR
Sbjct: 70 PLLLRGLVAAADVVLCVEHTTVDGPARAMRVISRNANLRALVHVEETCSYR 120
>01_01_0942 + 7428384-7429536,7429623-7430335
Length = 621
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 501 EYRSAGPGQTVAKRSAWIDSQVFGFSRAIRAFGIERF 611
EYR++GPG V R W +V F + RF
Sbjct: 565 EYRNSGPGAAVGGRVPWPGHRVIKLPEEAMEFTVGRF 601
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 677 GPRVHAVQDVVEPARHLRAVLLEPFDAECPYGSREAENLRVD-PRRTLGHGLARA 516
GP A D E H +A+LLE E P+ R N ++ ++ LG+ AR+
Sbjct: 565 GPTYFATDDCPEKYEHGKALLLEWALKEAPWEMRRLHNFYMEASKKGLGNITARS 619
>07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358
Length = 717
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/53 (22%), Positives = 20/53 (37%)
Frame = +1
Query: 529 PWPSVRRGSTRRFSASREPYGHSASKGSRRTARRWRAGSTTSCTACTRGPRVP 687
P+ + G R + + H +R R W + T+C R P +P
Sbjct: 506 PYTPQQNGVAERMNRTIISKAHCMLSNARMNKRFWAEAANTACYLINRSPSIP 558
>02_02_0357 + 9360108-9360754,9363732-9364137
Length = 350
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 613 RRTARRWRAGSTTSCTACTRGPR 681
RRT WR S T+ T C RG R
Sbjct: 165 RRTGAGWREYSGTNATGCRRGHR 187
>02_02_0355 + 9312814-9313650
Length = 278
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 613 RRTARRWRAGSTTSCTACTRGPR 681
RRT WR S T+ T C RG R
Sbjct: 185 RRTGAGWREYSGTNATGCRRGHR 207
>01_03_0304 -
14838977-14838988,14839291-14840302,14840414-14840609,
14840795-14841149
Length = 524
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Frame = -1
Query: 479 HFSVP*ISGVCYEN---LL---FRINDTLFDYFNGFSVEKSFTPFWNSVGFSQEPLCIKT 318
H +V + G C E+ LL F N TL+D +G K +WN + + E
Sbjct: 288 HRNVVKLFGCCLESEVPLLVYEFISNGTLYDLLHGNLQSKCVLTWWNRIRIALEAASALA 347
Query: 317 TVSNLSAPCIFR*DVSTLRIWVSPPVTTR 231
+ ++ IF DV + I + TT+
Sbjct: 348 YLHCAASVPIFHRDVKSANILLDDNFTTK 376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,349,335
Number of Sequences: 37544
Number of extensions: 410429
Number of successful extensions: 1361
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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