Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30400
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17027| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_2069| Best HMM Match : Glyco_hydro_20 (HMM E-Value=7.9e-14)         29   2.7  
SB_21168| Best HMM Match : WD40 (HMM E-Value=6.3e-15)                  29   4.7  
SB_45909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)                    28   6.2  
SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)                       28   6.2  
SB_53870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_17027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +1

Query: 493 RELSTGRPARARPWPSVRRGSTRRFSASREPYGHSASK 606
           RE      +RA PWP + RG   RFS  R  Y  S  K
Sbjct: 24  REQDLANASRA-PWPEIHRGFPSRFSKERHGYTLSTVK 60


>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 606 FRCRMPVWLAR-SRKPASRSTPNAWPRSGPGRPTCTQLSQLHS 481
           F+CR     A+ +R   SR  PN  P  G   P CT +S LH+
Sbjct: 237 FQCRCIKGFAQCTRTECSRDCPNPEPIPGQCCPICTIISILHT 279


>SB_2069| Best HMM Match : Glyco_hydro_20 (HMM E-Value=7.9e-14)
          Length = 403

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 174 KMTRYFENTSVFNFSWDQVARGYWRRYPNPQSTHVLSED 290
           +M ++F+   +F+F  D+VA G W    N  +  +L ED
Sbjct: 62  RMHQHFQKLKMFHFGGDEVAHGAW---TNSTAAKILRED 97


>SB_21168| Best HMM Match : WD40 (HMM E-Value=6.3e-15)
          Length = 476

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
 Frame = +3

Query: 90  Y*KDKTFSFCFGMKTKYN*SKKH*SLNGKMTRYFEN--TSVFNFSWDQVARGYWRRYPNP 263
           Y   +  S+  G  T Y   K    LNGKMTRY      S  N        G   RY N 
Sbjct: 232 YLNSELTSYLNGKMTSYLNGKLTSYLNGKMTRYLNGKMASYLNGKLTSYLNGKMTRYLNG 291

Query: 264 QST 272
           ++T
Sbjct: 292 KNT 294


>SB_45909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 186 YFENTSVFNFSWDQVARGYWRRYPNP--QSTHVLSEDTWSRQVRDGCLYTKRLLTKTNRV 359
           +F+N  + N + ++   G W  YP P   +     +  +   +  GC++   +L K N  
Sbjct: 48  HFDN-GIRNVTGEKATAGVWATYPQPWLSTQGAFGDQVFGTMLLTGCIFA--ILDKHNNA 104

Query: 360 PKWG 371
           P  G
Sbjct: 105 PDKG 108


>SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)
          Length = 593

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +1

Query: 496 ELSTGRP----ARARPWPSVRRGSTRRFSASREPYGHSASKGSRRTAR 627
           E S G P    + AR  P+ R+  TR +S +R+P  H A+K  R+T +
Sbjct: 67  EASRGSPQIHGSLARYTPNTRK--TRVYSNTRKPREHDANKNPRKTTK 112


>SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)
          Length = 594

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 411 ESVVDPEKKILVTYTRNLGYTKVMSVV-ERVEYRSA 515
           ES+++ E K  V+Y   LGYTK +SV+ E   Y SA
Sbjct: 256 ESLLETEPK--VSYRHKLGYTKFVSVIPEENRYVSA 289


>SB_53870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 327 YKDNRLEPVGSMYLQIGREYSADLGISSSNHAQLDPN*S*RPKYFRNISSFYRL 166
           Y  +RLE    MY++  R YS  L ++  N ++   + S + + FR I   +R+
Sbjct: 155 YVSSRLEIHRQMYVEKCRAYSTALNVAKRNFSKDQISCSNQTQLFRFIDGLFRV 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,377,522
Number of Sequences: 59808
Number of extensions: 475456
Number of successful extensions: 1414
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)