Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30400
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66519-4|CAA91373.1| 210|Caenorhabditis elegans Hypothetical pr... 97 8e-21
Z81063-4|CAB02955.1| 209|Caenorhabditis elegans Hypothetical pr... 66 3e-11
AF016451-10|AAB66006.2| 259|Caenorhabditis elegans Hypothetical... 35 0.063
Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr... 30 1.8
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ... 30 1.8
Z47357-3|CAA87422.1| 360|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81116-1|CAB03301.1| 347|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical pr... 28 5.5
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 28 7.3
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 28 7.3
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 28 7.3
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 28 7.3
>Z66519-4|CAA91373.1| 210|Caenorhabditis elegans Hypothetical
protein B0334.4 protein.
Length = 210
Score = 97.5 bits (232), Expect = 8e-21
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 5/116 (4%)
Frame = +3
Query: 195 NTSVFNFSWDQVARGYWRRYPNPQSTHVLSEDTWSRQVRDGCLYTKRLLTK-----TNRV 359
NTS F +S+D+VA +W RYPN + H++SED RQ+ D + TK+L+ K RV
Sbjct: 8 NTS-FPYSFDEVASAFWDRYPNSHAKHIISEDVLERQITDNTIVTKKLIVKQGSSILKRV 66
Query: 360 PKWGERFFNAKSVKIIEESVVDPEKKILVTYTRNLGYTKVMSVVERVEYRSAGPGQ 527
P+W R + + V +IEESV D K LVTYTRN+ + + + ER Y+S+ Q
Sbjct: 67 PRWISRMTDIQVVPVIEESVYDKVSKKLVTYTRNVSHISLFQLHERCIYKSSEDNQ 122
>Z81063-4|CAB02955.1| 209|Caenorhabditis elegans Hypothetical
protein F15D3.6 protein.
Length = 209
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/161 (22%), Positives = 74/161 (45%), Gaps = 3/161 (1%)
Frame = +3
Query: 183 RYFENTSVFNFSWDQVARGYWRRYPNPQSTHVLSEDTWSRQVRDGCLYTKRLLTKTNRVP 362
R + + +F+ W+ VA+ +R+YPNP + + D + + G + T+R++ +P
Sbjct: 2 RIWSSEHIFDHEWETVAQAAFRKYPNPLNRSITGIDVVKQTLEAGKILTERIIQSHFSIP 61
Query: 363 KWGERFFNAKSVKIIEE-SVVDPEKKILVTYTRNLGYTKVMSVVERVEYRSA--GPGQTV 533
W + + E +V+DP +K TRNL + + V E++ Y A P +T+
Sbjct: 62 SWATKLTGFSGTQYSHEYTVIDPTRKEFSLTTRNLNGSSFLRVDEKLTYTPAHEDPNKTI 121
Query: 534 AKRSAWIDSQVFGFSRAIRAFGIERFKKNCSQMASGFNHVL 656
K+ + + F+ + + +N ++ G V+
Sbjct: 122 LKQDVIVTITLPAFADYCEKTFLSIYSQNANKGRQGVEWVI 162
>AF016451-10|AAB66006.2| 259|Caenorhabditis elegans Hypothetical
protein C03A7.12 protein.
Length = 259
Score = 34.7 bits (76), Expect = 0.063
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -1
Query: 260 IWVSPPVTTRNLIPTEVKDRSIFEISRHF--TV*TSMLFTSIIFGLHSKTEGKRLIFSIH 87
+W+ T NL+ V I + R F TV T S + G + +TE R IFS+
Sbjct: 20 LWMGISADTVNLLQPRVFKFQILTVLRFFFSTVPTQSAILSFLSGGNRRTENARAIFSVS 79
Query: 86 LNAGFFLRNLIR 51
+N + R +R
Sbjct: 80 INFPVYPRYAVR 91
>Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical
protein H12I19.2 protein.
Length = 324
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 199 VFSKYLVILPFRLQCFLL---QLYLVFIPKQKENVLSFQYI 86
++ YL+I + L FLL + L F PK KE VLS Q I
Sbjct: 108 LYIMYLIIQVYHLLIFLLAVGRFLLYFFPKTKETVLSAQNI 148
>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical
protein T01G1.1c protein.
Length = 1580
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 497 SLNYTHHFSVP*ISGVCYENLLFRINDTLFDYFN 396
S Y H F +P + V YE+ + ++ D LFD +N
Sbjct: 44 SFTYDHVFDMPTLQYVVYESCVEKLVDGLFDGYN 77
>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical
protein T01G1.1a protein.
Length = 1605
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 497 SLNYTHHFSVP*ISGVCYENLLFRINDTLFDYFN 396
S Y H F +P + V YE+ + ++ D LFD +N
Sbjct: 44 SFTYDHVFDMPTLQYVVYESCVEKLVDGLFDGYN 77
>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical
protein T01G1.1c protein.
Length = 1580
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 497 SLNYTHHFSVP*ISGVCYENLLFRINDTLFDYFN 396
S Y H F +P + V YE+ + ++ D LFD +N
Sbjct: 44 SFTYDHVFDMPTLQYVVYESCVEKLVDGLFDGYN 77
>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical
protein T01G1.1a protein.
Length = 1605
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 497 SLNYTHHFSVP*ISGVCYENLLFRINDTLFDYFN 396
S Y H F +P + V YE+ + ++ D LFD +N
Sbjct: 44 SFTYDHVFDMPTLQYVVYESCVEKLVDGLFDGYN 77
>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
protein KLP-12 protein.
Length = 1609
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 497 SLNYTHHFSVP*ISGVCYENLLFRINDTLFDYFN 396
S Y H F +P + V YE+ + ++ D LFD +N
Sbjct: 48 SFTYDHVFDMPTLQYVVYESCVEKLVDGLFDGYN 81
>Z47357-3|CAA87422.1| 360|Caenorhabditis elegans Hypothetical
protein ZK1128.3 protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 180 TRYFENTSVFNFSWDQVARGYWRRYPN-PQSTHVLSEDTWSRQVRDGCLYTKRLLTKTNR 356
TR FE SV NF ++ R YW P+ P+ ++ + TW+ + DGCL + LL N+
Sbjct: 166 TRSFEMESVENFQSHRMRRVYWN--PSIPKDSNSMFR-TWNHFL-DGCLLS-LLLVPLNK 220
Query: 357 V 359
+
Sbjct: 221 L 221
>Z81116-1|CAB03301.1| 347|Caenorhabditis elegans Hypothetical
protein T06C12.1 protein.
Length = 347
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 174 KMTRYFENTSVFNFSWDQVARGYWRRYPNPQSTHVLSEDTW 296
KM +F VF W+ +AR + Y N + V+S +TW
Sbjct: 42 KMVIFFAGWGVFFSGWELIARPFAHNYNN--AVIVMSVNTW 80
>Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.1 protein.
Length = 306
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 550 GSTRRFSASREPY-GHSASKGSRRTARRWRAGSTTSCTACTRGPRVPP 690
G +F RE + G S + +RR A R R SC GP+ PP
Sbjct: 77 GVPSKFVVKREAHRGMSKRRVARRKAIRRRQAECCSCGVGAAGPQGPP 124
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 222 DQVARGYWRRYPNPQSTH 275
++ R +W RYP PQ++H
Sbjct: 171 EEETRAFWERYPLPQASH 188
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 222 DQVARGYWRRYPNPQSTH 275
++ R +W RYP PQ++H
Sbjct: 812 EEETRAFWERYPLPQASH 829
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 222 DQVARGYWRRYPNPQSTH 275
++ R +W RYP PQ++H
Sbjct: 812 EEETRAFWERYPLPQASH 829
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 222 DQVARGYWRRYPNPQSTH 275
++ R +W RYP PQ++H
Sbjct: 812 EEETRAFWERYPLPQASH 829
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,224
Number of Sequences: 27780
Number of extensions: 358739
Number of successful extensions: 955
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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