Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30400
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13070.1 68418.m01498 MSF1-like family protein similar to px1...    56   2e-08
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    33   0.18 
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    33   0.18 
At5g12950.1 68418.m01485 expressed protein putative secreted pro...    30   1.7  
At2g26440.1 68415.m03172 pectinesterase family protein contains ...    30   1.7  
At2g07190.1 68415.m00824 hypothetical protein                          29   2.2  
At1g26330.1 68414.m03211 hypothetical protein                          29   3.9  
At4g03940.1 68417.m00557 expressed protein                             28   6.8  
At2g41250.1 68415.m05094 haloacid dehalogenase-like hydrolase fa...    27   8.9  
At1g79190.1 68414.m09233 expressed protein                             27   8.9  

>At5g13070.1 68418.m01498 MSF1-like family protein similar to px19
           [Gallus gallus] GI:969170; contains Pfam profile
           PF04707: MSF1-like conserved region
          Length = 183

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
 Frame = +3

Query: 177 MTRYFENTSVFNFSWDQVARGYWRRYPNPQS----THVLSEDTWSRQV--RDGCLYTKRL 338
           M + +    V+   W++V+   WR++ +P++    +H+L  DT +R++    G L+T R 
Sbjct: 1   MVKAYRQEHVYKHPWERVSAASWRKFADPENKRILSHILEVDTLNRKLDTETGKLHTTRA 60

Query: 339 LTKTNRVPKWGERFFNAKSVKIIEESVVDPEKKILVTYTRNLGYTKVMSVVERVEY 506
           LT     P +  R         +E +VVD + + +   T+N+   K + V ER+ Y
Sbjct: 61  LTIHAPGPWFLHRIIGQDICHCVESTVVDGKSRSMQLTTKNISLKKFIEVEERIRY 116


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 511 RPARARPWPSVRRGSTRRFSASREPYGHSASKGSRRTARRWRAGSTTSCTACTRGPRVPP 690
           +P+R R  PSV   S+R  S SR     S S    R+  R  + S++   + + G R PP
Sbjct: 3   KPSRGRRSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPP 62


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 511 RPARARPWPSVRRGSTRRFSASREPYGHSASKGSRRTARRWRAGSTTSCTACTRGPRVPP 690
           +P+R R  PSV   S+R  S SR     S S    R+  R  + S++   + + G R PP
Sbjct: 3   KPSRGRRSPSVSGSSSRSSSRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSPP 62


>At5g12950.1 68418.m01485 expressed protein putative secreted
           protein SCF41.30c, Streptomyces coelicolor,
           EMBL:SCF41_30
          Length = 861

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 501 EYRSAGPGQTVAKRSAWIDSQVFGFSRAIRAFGIERFKKNCSQMASGFNHVLHSMY 668
           +Y+ AG  Q +   +   D         IR + +ER  ++ ++   G N VL+ +Y
Sbjct: 247 QYKLAGNSQALKMATGMADYFYGRVRNVIRKYSVERHWQSLNEETGGMNDVLYQLY 302


>At2g26440.1 68415.m03172 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 547

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 26/107 (24%), Positives = 41/107 (38%)
 Frame = +3

Query: 264 QSTHVLSEDTWSRQVRDGCLYTKRLLTKTNRVPKWGERFFNAKSVKIIEESVVDPEKKIL 443
           QS     EDT         L ++ L   +N+V  +  R +   S  ++ ES +D      
Sbjct: 417 QSRDTQDEDTGISMQNCSILASEDLFNSSNKVKSYLGRPWREFSRTVVMESYIDEFIDGS 476

Query: 444 VTYTRNLGYTKVMSVVERVEYRSAGPGQTVAKRSAWIDSQVFGFSRA 584
                N G  + +  +   EY + GPG    KR  W    + G+  A
Sbjct: 477 GWSKWNGG--EALDTLYYGEYNNNGPGSETVKRVNWPGFHIMGYEDA 521


>At2g07190.1 68415.m00824 hypothetical protein
          Length = 452

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 285 EDTWSRQV-RDGCLYTKRLLTKTNRVPKWGER 377
           +D WSR + RDG +  ++L+T    V KW E+
Sbjct: 13  KDFWSRLLKRDGNICIRKLMTDIEDVKKWSEK 44


>At1g26330.1 68414.m03211 hypothetical protein
          Length = 1196

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 275  VSTLRIWVSPPVTTRNLIPTEVKDRSIF 192
            ++  ++W S  V  + L+P EVKD +I+
Sbjct: 1057 LAATKLWFSKGVNNKTLVPAEVKDTAIW 1084


>At4g03940.1 68417.m00557 expressed protein 
          Length = 310

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +3

Query: 339 LTKTNRVPKWGERFFNAKSVKIIEESVVDPEKKILVTYTRNLGYTKVMSV-VERVEYRSA 515
           L K +R+         AK V  + +   + E K    Y   +  T  +S  +  + YR  
Sbjct: 116 LEKASRIQGMEVNRDKAKGVLALLQESQEKEAKTFKMYEATIVGTNYISFQINELNYRRE 175

Query: 516 GPGQTVAKRSAWIDSQ 563
           G G+ + +R +W +++
Sbjct: 176 GIGRNLPRRRSWCETK 191


>At2g41250.1 68415.m05094 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|Q94915 Rhythmically
           expressed gene 2 protein (DREG-2) {Drosophila
           melanogaster}; contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 290

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 184 DISKILRSLTSVGIKLRVVTGGDTQIRRVL 273
           D  K+ +++   G+K+ +V+  DT++R +L
Sbjct: 177 DAGKVFKAIKEAGVKVAIVSNFDTRLRPLL 206


>At1g79190.1 68414.m09233 expressed protein
          Length = 1274

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 656 QDVVEPARHLRAVLLEPFDAECPYGSREAENLRVDPRRTLGHGLARAG 513
           Q  +    H  ++LL+  DAE   G R + NLRV+    L   +A+ G
Sbjct: 218 QSALAAVGHWLSILLKVADAEASRGHRGSANLRVEAFMALRILVAKIG 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,696,221
Number of Sequences: 28952
Number of extensions: 334823
Number of successful extensions: 930
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)