Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30399
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 40 3e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 31 0.23
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 29 0.53
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 29 0.70
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.7
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 26 6.5
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 26 6.5
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha... 25 8.6
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 8.6
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 40.3 bits (90), Expect = 3e-04
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +2
Query: 269 TRMEEDNIQDKERF-ASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILR 445
T ME+ + +E + A R +H E+ERRRR ++ I EL+++VP C + +K +IL+
Sbjct: 73 TTMEKPCVGSEEWYKAKRLSHKEVERRRREAISEGIKELANIVPGC-----EKNKGSILQ 127
Query: 446 MAVAHMKALRGTGNTSTDGTYKPSFLTDQELKHLILEAA 562
++++L+ + + + D ++ L E A
Sbjct: 128 RTAQYIRSLKEMEEMCREKSNLEKLVADHTIQELARENA 166
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 30.7 bits (66), Expect = 0.23
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +2
Query: 503 TYKPSFLTDQELKHLILEAADGFLFVVSCDTGRIIYVSDSIAPVLNYSQGEWYSSCLYDQ 682
++ S +TD+ L ++++ DG ++ G +I S P+ + S L D+
Sbjct: 168 SWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Query: 683 VHPDDVEKVREQLSTQ 730
PD K E++ +
Sbjct: 228 NEPDSSLKTAERIKEE 243
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 29.5 bits (63), Expect = 0.53
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Frame = +2
Query: 293 QDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSA----------------LARKP 424
Q+ + R H IE+R R+ + I EL D VPT + L+RK
Sbjct: 420 QNLSPLSKRSAHNMIEKRYRSNLNDKIAELRDAVPTLRSGYNSTTADELKGTYVPLSRKL 479
Query: 425 DKLTILRMAVAHMKALR 475
+K TIL A ++K+L+
Sbjct: 480 NKATILSKATEYIKSLQ 496
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 29.1 bits (62), Expect = 0.70
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 8 WKMAFVSREVL*IFVLCNCWKHLRIVNEIFYYN 106
W F+ + + VLC W R+VN++F YN
Sbjct: 346 WFPGFIFKGLSYFTVLCWIWPKNRVVNQLFGYN 378
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 464 KALRGTGNTSTDGTYKPS 517
K +RG GN +TDG +K S
Sbjct: 209 KVVRGDGNAATDGRFKAS 226
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 377 ELSDMVPTCSALARKPDKLTILRM 448
EL D++P LAR PD T+L +
Sbjct: 300 ELIDLIPFLEHLARVPDVSTVLNL 323
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +1
Query: 355 QDDGVYHGTI*YGSNMLRTRPEARQANHTAYGSSSHESIKRHWQYFYRWNI 507
Q DG++ Y PE ++ SS H + ++W + RW+I
Sbjct: 35 QSDGIHETNSEYDEKKREESPEVIDISNLI--SSDHPAHPQNWHWAKRWSI 83
>SPBC409.20c |psh3||ER chaperone SHR3 homologue
Psh3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 743 YSEVLVYLTALVLF 702
YS L+YLTAL+LF
Sbjct: 102 YSSTLLYLTALILF 115
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 326 HCEIERRRRNKMTAYITELSDMVPTCSALA 415
H IE+R R + I EL D VP+ A A
Sbjct: 265 HNMIEKRYRTNLNDRICELRDAVPSLRAAA 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,036
Number of Sequences: 5004
Number of extensions: 61663
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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