Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30399
(744 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25710.1 68416.m03199 basic helix-loop-helix (bHLH) family pr... 46 2e-05
At1g68810.1 68414.m07866 basic helix-loop-helix (bHLH) family pr... 43 2e-04
At5g65320.1 68418.m08217 basic helix-loop-helix (bHLH) family pr... 40 0.002
At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family pr... 39 0.003
At3g56770.1 68416.m06314 basic helix-loop-helix (bHLH) family pr... 38 0.009
At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family pr... 36 0.021
At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4)... 36 0.021
At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4)... 36 0.021
At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)... 36 0.021
At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)... 36 0.021
At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family pr... 36 0.028
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr... 36 0.037
At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family pr... 36 0.037
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr... 35 0.050
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr... 35 0.050
At2g22770.1 68415.m02701 basic helix-loop-helix (bHLH) family pr... 35 0.065
At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family pr... 35 0.065
At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family pr... 34 0.087
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ... 34 0.087
At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family pr... 34 0.087
At2g22760.1 68415.m02699 basic helix-loop-helix (bHLH) family pr... 33 0.15
At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein (... 33 0.20
At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family pr... 32 0.35
At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family pr... 32 0.35
At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family pr... 32 0.35
At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family pr... 32 0.35
At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family pr... 32 0.35
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr... 32 0.46
At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family pr... 31 0.61
At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family pr... 31 0.61
At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) / re... 31 0.61
At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family pr... 30 1.4
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi... 30 1.9
At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family pr... 30 1.9
At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family pr... 29 2.5
At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family pr... 29 2.5
At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family pr... 29 2.5
At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family pr... 29 2.5
At5g52120.1 68418.m06469 F-box family protein / SKP1 interacting... 29 3.3
At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein S... 29 3.3
At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family pr... 29 3.3
At3g27970.1 68416.m03491 exonuclease family protein contains exo... 29 3.3
At1g31860.1 68414.m03916 histidine biosynthesis bifunctional pro... 29 3.3
At2g04190.1 68415.m00404 meprin and TRAF homology domain-contain... 29 4.3
At5g65640.1 68418.m08257 basic helix-loop-helix (bHLH) family pr... 28 5.7
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr... 28 5.7
At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family pr... 28 5.7
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 28 5.7
At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family pr... 28 5.7
At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family pr... 28 5.7
At5g01170.1 68418.m00021 glycine-rich protein predicted proteins... 28 7.5
At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family pr... 28 7.5
At2g28780.1 68415.m03499 expressed protein 28 7.5
At1g63650.2 68414.m07202 basic helix-loop-helix (bHLH) family pr... 28 7.5
At1g63650.1 68414.m07201 basic helix-loop-helix (bHLH) family pr... 28 7.5
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 27 9.9
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 9.9
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 9.9
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 27 9.9
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 27 9.9
>At3g25710.1 68416.m03199 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 344
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/80 (28%), Positives = 44/80 (55%)
Frame = +2
Query: 272 RMEEDNIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMA 451
++ + D + A+ ++H E ERRRR ++ ++ +L ++P + K DK ++L
Sbjct: 118 KLSAQEVMDAKALAASKSHSEAERRRRERINTHLAKLRSILPNTT----KTDKASLLAEV 173
Query: 452 VAHMKALRGTGNTSTDGTYK 511
+ HMK L+ + TD TY+
Sbjct: 174 IQHMKELKRQTSQITD-TYQ 192
>At1g68810.1 68414.m07866 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 368
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +2
Query: 272 RMEEDNIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMA 451
+M I D + A+ ++H E ERRRR ++ ++ +L ++P + K DK ++L
Sbjct: 160 KMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPNTT----KTDKASLLAEV 215
Query: 452 VAHMKALR 475
+ H+K L+
Sbjct: 216 IQHVKELK 223
>At5g65320.1 68418.m08217 basic helix-loop-helix (bHLH) family
protein contains similarity to bHLH DNA-binding protein
Length = 296
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/70 (31%), Positives = 38/70 (54%)
Frame = +2
Query: 263 KYTRMEEDNIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTIL 442
K R E I DKE R NH +ER RR +M +++ L M+P + ++ D+ +I+
Sbjct: 85 KRRRRSEKTIVDKEN--QRMNHIAVERNRRKQMNHFLSILKSMMPL--SYSQPNDQASII 140
Query: 443 RMAVAHMKAL 472
++++K L
Sbjct: 141 EGTISYLKKL 150
>At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 253
Score = 39.1 bits (87), Expect = 0.003
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +2
Query: 281 EDNIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAH 460
E QD+ A R NH E ERRRR ++ +++ +L +++ +C++ K DK T+L V
Sbjct: 57 ETMAQDRALAALR-NHKEAERRRRERINSHLNKLRNVL-SCNS---KTDKATLLAKVVQR 111
Query: 461 MKALR-GTGNTS-TDGTYKPSFLTDQELKHLILEAADGFL 574
++ L+ T TS +D T PS + + H + DG +
Sbjct: 112 VRELKQQTLETSDSDQTLLPSETDEISVLHFGDYSNDGHI 151
>At3g56770.1 68416.m06314 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 230
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/72 (30%), Positives = 40/72 (55%)
Frame = +2
Query: 290 IQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKA 469
+ + + AS NH E ER+RR ++ +++ +L ++ +C++ K DK T+L V +K
Sbjct: 37 VYEDKALASLRNHKEAERKRRARINSHLNKLRKLL-SCNS---KTDKSTLLAKVVQRVKE 92
Query: 470 LRGTGNTSTDGT 505
L+ TD T
Sbjct: 93 LKQQTLEITDET 104
>At4g09820.1 68417.m01611 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 379
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/64 (35%), Positives = 31/64 (48%)
Frame = +2
Query: 284 DNIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHM 463
DN +DK +H ERRRR K+ L MVP K DK++IL +A++
Sbjct: 211 DNTKDKRLPREDLSHVVAERRRREKLNEKFITLRSMVP----FVTKMDKVSILGDTIAYV 266
Query: 464 KALR 475
LR
Sbjct: 267 NHLR 270
>At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 428
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +2
Query: 305 RFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
R + E H ERRRR+++ + L +++P CS K DK +IL A+ ++K+L+
Sbjct: 255 RSRAAEVHNLSERRRRDRINERMKALQELIPHCS----KTDKASILDEAIDYLKSLQ 307
>At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4) /
basic helix-loop-helix protein 9 (bHLH9) / short under
red-light 2 (SRL2) identical to SP|Q8W2F3
Phytochrome-interacting factor 4 (Basic helix-loop-helix
protein 9) (bHLH9) (Short under red-light 2)
{Arabidopsis thaliana}; supporting cDNA
gi|18026965|gb|AF251694.1|AF251694
Length = 430
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +2
Query: 305 RFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
R + E H ERRRR+++ + L +++P CS K DK +IL A+ ++K+L+
Sbjct: 255 RSRAAEVHNLSERRRRDRINERMKALQELIPHCS----KTDKASILDEAIDYLKSLQ 307
>At1g09530.2 68414.m01069 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 36.3 bits (80), Expect = 0.021
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +2
Query: 302 ERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
+R S E H ERRRR+++ + L +++P C+ K DK ++L A+ ++K+L+
Sbjct: 340 KRSRSAEVHNLSERRRRDRINEKMRALQELIPNCN----KVDKASMLDEAIEYLKSLQ 393
>At1g09530.1 68414.m01068 phytochrome interacting factor 3 (PIF3)
identical to phytochrome interacting factor 3 (PIF3)
GI:3929585 from [Arabidopsis thaliana]
Length = 524
Score = 36.3 bits (80), Expect = 0.021
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +2
Query: 302 ERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
+R S E H ERRRR+++ + L +++P C+ K DK ++L A+ ++K+L+
Sbjct: 340 KRSRSAEVHNLSERRRRDRINEKMRALQELIPNCN----KVDKASMLDEAIEYLKSLQ 393
>At5g61270.1 68418.m07689 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 366
Score = 35.9 bits (79), Expect = 0.028
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +2
Query: 326 HCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
H E ERRRR+++ + L ++PT S K DK++IL + H+K L+
Sbjct: 171 HNESERRRRDRINQRMRTLQKLLPTAS----KADKVSILDDVIEHLKQLQ 216
>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 478
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/69 (27%), Positives = 38/69 (55%)
Frame = +2
Query: 269 TRMEEDNIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRM 448
T+ + +R + E H ER+RR+++ + L +++P C+ K DK ++L
Sbjct: 270 TKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCN----KSDKASMLDE 325
Query: 449 AVAHMKALR 475
A+ +MK+L+
Sbjct: 326 AIEYMKSLQ 334
>At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 407
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/69 (27%), Positives = 38/69 (55%)
Frame = +2
Query: 269 TRMEEDNIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRM 448
T+ + +R + E H ER+RR+++ + L +++P C+ K DK ++L
Sbjct: 199 TKQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCN----KSDKASMLDE 254
Query: 449 AVAHMKALR 475
A+ +MK+L+
Sbjct: 255 AIEYMKSLQ 263
>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 444
Score = 35.1 bits (77), Expect = 0.050
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +2
Query: 305 RFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
R + E H ERRRR+++ + L +++P CS + DK +IL A+ ++K+L+
Sbjct: 254 RSRAAEVHNLSERRRRDRINERMKALQELIPHCS----RTDKASILDEAIDYLKSLQ 306
>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 442
Score = 35.1 bits (77), Expect = 0.050
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +2
Query: 305 RFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
R + E H ERRRR+++ + L +++P CS + DK +IL A+ ++K+L+
Sbjct: 254 RSRAAEVHNLSERRRRDRINERMKALQELIPHCS----RTDKASILDEAIDYLKSLQ 306
>At2g22770.1 68415.m02701 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 314
Score = 34.7 bits (76), Expect = 0.065
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 320 ENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
+ H ER+RR K+ + LS ++P +K DK T+L A+ H+K L+
Sbjct: 125 KEHVLAERKRRQKLNERLIALSALLPGL----KKTDKATVLEDAIKHLKQLQ 172
>At2g22750.1 68415.m02697 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 304
Score = 34.7 bits (76), Expect = 0.065
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +2
Query: 311 ASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
++ ++H ER+RR K+T LS ++P +K DK ++L A+ H+K L+
Sbjct: 122 SNAQDHILAERKRREKLTQRFVALSALIPG----LKKMDKASVLGDAIKHIKYLQ 172
>At4g37850.1 68417.m05354 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 328
Score = 34.3 bits (75), Expect = 0.087
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +2
Query: 311 ASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
++ ++H ER+RR K+T LS +VP +K DK ++L A+ H+K L+
Sbjct: 148 SNAQDHIIAERKRREKLTQRFVALSALVPG----LKKMDKASVLGDALKHIKYLQ 198
>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
putative similar to PIF3 like basic Helix Loop Helix
protein (PIL1) [Arabidopsis thaliana] GI:22535492;
contains Myc-type, 'helix-loop-helix' dimerization
domain signature, PROSITE:PS00038
Length = 416
Score = 34.3 bits (75), Expect = 0.087
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +2
Query: 302 ERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
+R S E H ER+RR++ + L D++P C K DK ++L A+ +M+ L+
Sbjct: 226 KRKRSTEVHKLYERKRRDEFNKKMRALQDLLPNC----YKDDKASLLDEAIKYMRTLQ 279
>At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 566
Score = 34.3 bits (75), Expect = 0.087
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +2
Query: 323 NHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
NH E ER+RR K+ L +VP S K DK ++L A++++K L+
Sbjct: 395 NHVEAERQRREKLNQRFYALRSVVPNIS----KMDKASLLGDAISYIKELQ 441
>At2g22760.1 68415.m02699 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 295
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 320 ENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
+ H ER+RR K++ LS ++P +K DK+TIL A++ MK L+
Sbjct: 118 KEHVLAERKRREKLSEKFIALSALLPGL----KKADKVTILDDAISRMKQLQ 165
>At1g32640.1 68414.m04026 basic helix-loop-helix (bHLH) protein
(RAP-1) identical to bHLH protein GB:CAA67885 GI:1465368
from [Arabidopsis thaliana]
Length = 623
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 323 NHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
NH E ER+RR K+ L +VP S K DK ++L A+A++ L+
Sbjct: 452 NHVEAERQRREKLNQRFYALRAVVPNVS----KMDKASLLGDAIAYINELK 498
>At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family
protein
Length = 592
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 323 NHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
NH E ER+RR K+ L +VP S K DK ++L A++++ L+
Sbjct: 415 NHVEAERQRREKLNQRFYSLRAVVPNVS----KMDKASLLGDAISYINELK 461
>At4g17880.1 68417.m02665 basic helix-loop-helix (bHLH) family
protein bHLH protein, Arabidopsis thaliana,
PATCHX:E255557
Length = 589
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 323 NHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
NH E ER+RR K+ L +VP S K DK ++L A++++ L+
Sbjct: 416 NHVEAERQRREKLNQRFYSLRAVVPNVS----KMDKASLLGDAISYISELK 462
>At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 307
Score = 32.3 bits (70), Expect = 0.35
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 155 PMSAVAPTIPGA--DPAKDLQKRRAXXXXXXXXXXXXXKYTRMEEDNIQDKERFAS-REN 325
P S T+P + P +R+ K R + ++ E + R N
Sbjct: 69 PFSQANMTLPSSTSSPLSAHSRRKRKINHLLPQEMTREKRKRRKTKPSKNNEEIENQRIN 128
Query: 326 HCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKAL 472
H +ER RR +M +I L ++P + ++ D+ +I+ A+ ++K L
Sbjct: 129 HIAVERNRRRQMNEHINSLRALLP--PSYIQRGDQASIVGGAINYVKVL 175
>At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 358
Score = 32.3 bits (70), Expect = 0.35
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +2
Query: 155 PMSAVAPTIPGA--DPAKDLQKRRAXXXXXXXXXXXXXKYTRMEEDNIQDKERFAS-REN 325
P S T+P + P +R+ K R + ++ E + R N
Sbjct: 120 PFSQANMTLPSSTSSPLSAHSRRKRKINHLLPQEMTREKRKRRKTKPSKNNEEIENQRIN 179
Query: 326 HCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKAL 472
H +ER RR +M +I L ++P + ++ D+ +I+ A+ ++K L
Sbjct: 180 HIAVERNRRRQMNEHINSLRALLP--PSYIQRGDQASIVGGAINYVKVL 226
>At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 590
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 323 NHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKAL 472
NH E ER+RR K+ L +VP S K DK ++L AV+++ L
Sbjct: 433 NHVEAERQRREKLNQRFYALRSVVPNIS----KMDKASLLGDAVSYINEL 478
>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 299 KERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
+ R + R H E E+RRR+K+ L D++P + +K DK + L + ++ L+
Sbjct: 29 RNRNSCRSKHSETEQRRRSKINERFQSLMDIIPQ-NQNDQKRDKASFLLEVIEYIHFLQ 86
>At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family
protein
Length = 511
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 323 NHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
NH E ER RR K+ L +VP S K DK ++L AV ++ L+
Sbjct: 343 NHVEAERMRREKLNHRFYALRAVVPNVS----KMDKTSLLEDAVCYINELK 389
>At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 305 RFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARK 421
R + ++H ER RR K++ +T L D+VP C+ + K
Sbjct: 195 RGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGK 233
>At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) /
reduced phytochrome signaling (REP1) / basic
helix-loop-helix FBI1 protein (FBI1) / reduced
sensitivity to far-red light (RSF1) / bHLH protein 26
(BHLH026) (BHLH26) identical to SP|Q9FE22 Long hypocotyl
in far-red 1 (bHLH-like protein HFR1) (Reduced
phytochrome signaling) (Basic helix-loop-helix FBI1
protein) (Reduced sensitivity to far-red light)
[Arabidopsis thaliana]
Length = 292
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 341 RRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
RRR KM+ + +L +VP C K DK+++L + +MK L+
Sbjct: 144 RRRDEKMSNKMRKLQQLVPNC----HKTDKVSVLDKTIEYMKNLQ 184
>At2g40200.1 68415.m04943 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 254
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 296 DKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
+K SR +H E+RRR+++ +++T L +VP L DK +L + +K L+
Sbjct: 58 EKAESLSR-SHRLAEKRRRDRINSHLTALRKLVPNSDKL----DKAALLATVIEQVKELK 112
>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain
Length = 478
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +2
Query: 299 KERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRG 478
++R + E H ERRRR K+ + L ++P C+ + + D ++ L ++ +K R
Sbjct: 251 RKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKV--ESDSVSTL---ISLLKFQRW 305
Query: 479 TGNTSTDGTYKPSF 520
+ST Y+ +
Sbjct: 306 MMLSSTSNRYRAKY 319
>At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 467
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 323 NHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHM 463
NH E ER+RR K+ L +VP S K DK ++L A+ ++
Sbjct: 320 NHVEAERQRREKLNQRFYALRAVVPNIS----KMDKASLLADAITYI 362
>At4g28790.2 68417.m04116 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 340
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +2
Query: 338 ERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
ERRRR K+ + L +++P C+ K D+ ++L + ++K+L+
Sbjct: 286 ERRRRQKINEMMKALQELLPRCT----KTDRSSMLDDVIEYVKSLQ 327
>At4g28790.1 68417.m04117 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 413
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +2
Query: 338 ERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
ERRRR K+ + L +++P C+ K D+ ++L + ++K+L+
Sbjct: 286 ERRRRQKINEMMKALQELLPRCT----KTDRSSMLDDVIEYVKSLQ 327
>At4g00050.1 68417.m00005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 399
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +2
Query: 326 HCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
H + ER+RR+K+ + L +VP S K DK ++L + ++K L+
Sbjct: 218 HNQSERKRRDKINQRMKTLQKLVPNSS----KTDKASMLDEVIEYLKQLQ 263
>At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 327
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 305 RFASRENHCEIERRRRNKMTAYITELSDMVPTCSAL 412
R + +NH ER RR K+ A + L ++VP C +
Sbjct: 189 RGQATDNHSLAERARREKINARMKLLQELVPGCDKI 224
>At5g52120.1 68418.m06469 F-box family protein / SKP1 interacting
partner 3-related contains Pfam profile PF00646: F-box
domain
Length = 291
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 665 SCLYDQVHPDDVEKVREQLSTQEPQ 739
+C DQVH D++ VR QLST + Q
Sbjct: 198 TCSLDQVHGWDIKPVRFQLSTSDGQ 222
>At4g36930.1 68417.m05235 basic helix-loop-helix (bHLH) protein
SPATULA (SPT) identical to SPATULA (SPT) GI:11245493
from [Arabidopsis thaliana]
Length = 373
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 302 ERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
+R + E H E+RRR+++ + L ++P + K DK ++L A+ ++K L+
Sbjct: 194 KRCRAAEVHNLSEKRRRSRINEKMKALQSLIPN----SNKTDKASMLDEAIEYLKQLQ 247
>At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family
protein similar to the myc family of helix-loop-helix
transcription factors; contains Pfam profile PF00010:
Helix-loop-helix DNA-binding domain; PMID: 12679534
Length = 423
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +2
Query: 323 NHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
+H E E++RR K+ L +VP S + DK ++L AV+++++L+
Sbjct: 249 SHVEAEKQRREKLNHRFYALRAIVPKVSRM----DKASLLSDAVSYIESLK 295
>At3g27970.1 68416.m03491 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 354
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 409 CGACWNHIR*FRDIRRHLVPP 347
CG C H R F +R HL+ P
Sbjct: 46 CGVCKKHCRSFESLREHLIGP 66
>At1g31860.1 68414.m03916 histidine biosynthesis bifunctional
protein (HISIE) identical to histidine biosynthesis
bifunctional protein hisIE, chloroplast [precursor] SP:
O82768 from [Arabidopsis thaliana]; identical to cDNA
phosphoribosyl-ATP pyrophosphohydrolase GI:3461883
Length = 281
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Frame = +2
Query: 407 ALARKPDKLTILRMAVAHMKALRGTGNTSTDGTY----KPSFLTDQELKHLILEAADGFL 574
A+A+ D +L + +AL T +S T+ + + T E + + D +
Sbjct: 69 AIAQNVDTGAVLMQGFVNREAL-STTISSRKATFFSRSRSTLWTKGETSNNFINILDVY- 126
Query: 575 FVVSCDTGRIIYVSDSIAPVLNYSQGEWYSSCLYDQVHPDDVEKVREQLST 727
V CD IIY+ P + + Y + ++DQ++ D+ + L+T
Sbjct: 127 --VDCDRDSIIYLGTPDGPTCHTGEETCYYTSVFDQLNNDEASGNKLALTT 175
>At2g04190.1 68415.m00404 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 411
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +2
Query: 482 GNTSTDGTYKPS-FLTDQELKHLILEAADGF---LFVVSCDTGRIIYVSDSIAPVLNYSQ 649
GN + G+ S +L +E HL + + F LFV + + + V+D I NY
Sbjct: 160 GNQNDGGSNHISLYLRSEETDHLTYDGSINFVLKLFVYNGKQDKYLTVTDGIQKRYNYKN 219
Query: 650 GEW 658
EW
Sbjct: 220 KEW 222
>At5g65640.1 68418.m08257 basic helix-loop-helix (bHLH) family
protein
Length = 351
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 338 ERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKAL 472
ERRRR ++ ++ L +VP S K D+ +IL A+ +MK L
Sbjct: 183 ERRRRKRLNDRLSMLRSIVPKIS----KMDRTSILGDAIDYMKEL 223
>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain ;annotation temporarily based on
supporting cDNA gi|17224394|gb|AF246291.1|AF246291
Length = 637
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +2
Query: 323 NHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKAL 472
NH +E++RR K+ L ++P+ + K DK++IL + +++ L
Sbjct: 441 NHAVLEKKRREKLNERFMTLRKIIPSIN----KIDKVSILDDTIEYLQEL 486
>At4g34530.1 68417.m04907 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 335
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 305 RFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKL 433
R + ++H ER RR K++ + L D+VP C + K L
Sbjct: 176 RGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGML 218
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +2
Query: 278 EEDNIQDKERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVA 457
++ + K S+ + ERRRR K+ + L +VP + L D+ +IL A+
Sbjct: 299 DDPKYKKKSGKGSQAKNLMAERRRRKKLNDRLYALRSLVPRITKL----DRASILGDAIN 354
Query: 458 HMKALRGTGNTSTD 499
++K L+ D
Sbjct: 355 YVKELQNEAKELQD 368
>At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family
protein
Length = 343
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 305 RFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARK 421
R + ++H ER RR K++ + L D+VP C+ + K
Sbjct: 140 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGK 178
>At1g59640.1 68414.m06707 basic helix-loop-helix (bHLH) family
protein
Length = 264
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 305 RFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARK 421
R + ++H ER RR K++ + L D+VP C+ + K
Sbjct: 140 RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGK 178
>At5g01170.1 68418.m00021 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 568
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 395 PTCSALARKPDKLTILRMAVAHMKALRGTGNTSTDGTYKPSFLTD-QELKHLILEAADGF 571
P S+ +RKP ++ + + + GT N++ +G +P F + + K + +GF
Sbjct: 58 PPPSSSSRKPPSISAVSLKALFKPSSSGTNNSNGNGRVRPGFFPELRRTKSFSAKNNEGF 117
>At3g07340.1 68416.m00875 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 456
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 305 RFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARK 421
R + ++H ER RR K++ + L D+VP C+ + K
Sbjct: 262 RGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGK 300
>At2g28780.1 68415.m03499 expressed protein
Length = 796
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 377 ELSDMVPTCSALARKPDKLTILRMAVAHMKALRGTGNTSTD----GTYKPSFLTDQELKH 544
+L + + LA+ +++T+L+ A KAL + NTS D T PSF T
Sbjct: 650 DLKSLTESIGLLAKSFEEITLLKSLDALEKALAKSDNTSWDIELGKTPNPSFSTAVSEPE 709
Query: 545 LILE 556
ILE
Sbjct: 710 KILE 713
>At1g63650.2 68414.m07202 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor (JAF13)
GB:AAC39455 [Petunia x hybrida]; contains Pfam profile:
PF00010 Helix-loop-helix DNA-binding domain
Length = 596
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 323 NHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
NH E++RR K+ L ++P+ S K DK++IL + +++ L+
Sbjct: 405 NHALSEKKRREKLNERFMTLRSIIPSIS----KIDKVSILDDTIEYLQDLQ 451
>At1g63650.1 68414.m07201 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor (JAF13)
GB:AAC39455 [Petunia x hybrida]; contains Pfam profile:
PF00010 Helix-loop-helix DNA-binding domain
Length = 596
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 323 NHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 475
NH E++RR K+ L ++P+ S K DK++IL + +++ L+
Sbjct: 405 NHALSEKKRREKLNERFMTLRSIIPSIS----KIDKVSILDDTIEYLQDLQ 451
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 409 CGACWNHIR*FRDIRRHLVPP 347
CG C H R F +R HL+ P
Sbjct: 37 CGICNKHCRSFDSLREHLIGP 57
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = -3
Query: 409 CGACWNHIR*FRDIRRHLVPP---ATFNLAMIFTTCKTLLVLNI 287
CG C H + F +R HL P + N IFT L L I
Sbjct: 48 CGVCLKHCKSFESVREHLNVPDHLSKGNCKAIFTKRGCTLCLQI 91
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = -3
Query: 409 CGACWNHIR*FRDIRRHLVPP---ATFNLAMIFTTCKTLLVLNI 287
CG C H + F +R HL P + N IFT L L I
Sbjct: 48 CGVCLKHCKSFESVREHLNVPDHLSKGNCKAIFTKRGCTLCLQI 91
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = -2
Query: 302 PCLEYCPPPSLCIFHHFR-RLHLIQ 231
P Y PPPS HH R HL+Q
Sbjct: 153 PVKHYSPPPSYTTLHHHRFTTHLLQ 177
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = -2
Query: 302 PCLEYCPPPSLCIFHHFR-RLHLIQ 231
P Y PPPS HH R HL+Q
Sbjct: 153 PVKHYSPPPSYTTLHHHRFTTHLLQ 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,781,927
Number of Sequences: 28952
Number of extensions: 317622
Number of successful extensions: 929
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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