Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30398
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 51 2e-07
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 50 3e-07
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 49 6e-07
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 49 8e-07
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 44 2e-05
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 44 3e-05
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 42 9e-05
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 42 1e-04
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 40 3e-04
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 38 0.001
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 37 0.003
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 36 0.006
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 30 0.38
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 29 0.89
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 27 2.7
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 2.7
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom... 27 3.6
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 179 KSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKT 352
K+ D R C C K F + T H R+HTGEKP+ C C+ ++S +LTRH +
Sbjct: 18 KNPDAPRPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARI 77
Query: 353 H 355
H
Sbjct: 78 H 78
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +2
Query: 176 LKSKDGRRNDTCEF--CGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSK 331
+++ G + C F C K F LT H R HT + + A S++
Sbjct: 45 IRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTNANSRRNAAAAAAANNSAR 98
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 50.0 bits (114), Expect = 3e-07
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Frame = +2
Query: 134 GLKNSGNGLLQNPLLKSKDGRRNDTCEF--CGKVFKNCSNLTVHRRSHTGEKPYKCEL-- 301
G K S LL+ L ++ R C++ C K F S+L +H+R HT KP+ C
Sbjct: 31 GKKYSRPSLLEQHL-RTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHYDG 89
Query: 302 CSYACAQSSKLTRHMKTHGRLGKDVYRCRF--CEMPFSVPSTLEKHMRKC 445
C L RH++ H + Y C + C+ FS L H+ C
Sbjct: 90 CDAQFYTQQHLERHIEVHRK--PKPYACTWEGCDECFSKHQQLRSHISAC 137
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +2
Query: 212 EFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDV--YRC 385
E CGK + S L H R+H+ E+P+ C+ C+++ H+K H R +V + C
Sbjct: 28 EECGKKYSRPSLLEQHLRTHSNERPFVCDYT--GCSKAFYRKSHLKIHKRCHTNVKPFSC 85
Query: 386 RF--CEMPFSVPSTLEKHM 436
+ C+ F LE+H+
Sbjct: 86 HYDGCDAQFYTQQHLERHI 104
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 49.2 bits (112), Expect = 6e-07
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTHGR 361
C FC +VF + H RSHTGEKP++C C + +L RH++TH R
Sbjct: 6 CPFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHLR 58
Score = 29.1 bits (62), Expect = 0.67
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 281 KPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRF--CEMPFSVPSTLEKHMR 439
K Y+C C + RH+++H G+ + C + C+ F+ L +H+R
Sbjct: 2 KSYECPFCKRVFHRQEHQVRHIRSH--TGEKPFECSYPSCKKRFTRRDELIRHVR 54
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +2
Query: 200 NDTCEF--CGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKD 373
N C F C K F NL H +HT +P++C +C + A+ RH + H G
Sbjct: 569 NYVCTFAGCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQLH--TGIK 626
Query: 374 VYRCRFCEMPFSVPSTLEKHMR 439
+ C C F+ L +H +
Sbjct: 627 AFACVTCNQRFARMDALNRHYK 648
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKT 352
C C K F + H + HTG K + C C+ A+ L RH K+
Sbjct: 602 CSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRHYKS 649
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTHG 358
C C + F S+L +H SHTGE+P+ C+ C A S + RH + HG
Sbjct: 470 CTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRIHG 521
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 188 DGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK 349
D +R C+ C K F NLT H+ H+ +P C C C + L RH++
Sbjct: 26 DSKRVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQ 79
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 41.9 bits (94), Expect = 9e-05
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 203 DTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKT 352
D C G V + L H RSHTGEKP+ C + C + +S L +HM+T
Sbjct: 78 DDCPRKGMVQTSRFALVAHLRSHTGEKPFICSVPECDRSFTRSDALAKHMRT 129
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +2
Query: 218 CGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCE 397
C K N+ H ++H ++PY+C+LC + L RH++ H G+ Y C C
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHEN-GRP-YVCE-CL 506
Query: 398 MPFSVPSTLEKHMRK 442
F+ L +H ++
Sbjct: 507 KRFNRLDALNRHKQR 521
Score = 28.7 bits (61), Expect = 0.89
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRH 343
C+ C F +L H R H +PY CE C + L RH
Sbjct: 475 CDLCKAGFVRHHDLKRHLRIHENGRPYVCE-CLKRFNRLDALNRH 518
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 191 GRRNDTCEFCGKVFKNCSNLTVHRRS-HTGEKPYKCELCSYACAQSSKLTRHMKTH 355
G ++ C C K FK +L H RS HT EKP+ C +C ++ L +H + H
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHERLH 473
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 218 CGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMK 349
C K F +L H R+H K + C C+ A A+S L RH++
Sbjct: 33 CPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQ 76
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKC 295
CE C + F +L H RSHT EKP+ C
Sbjct: 72 CETCTRAFARLEHLKRHIRSHTNEKPFTC 100
Score = 29.1 bits (62), Expect = 0.67
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 281 KPYKCELCSYACAQSSKLTRHMKTH 355
K Y CE C+ A A+ L RH+++H
Sbjct: 68 KQYVCETCTRAFARLEHLKRHIRSH 92
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 209 CEF--CGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHM 346
C+F C K F + H RSHT K + C CS + +S L RH+
Sbjct: 19 CDFQGCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHV 66
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 296 ELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFC--EMPFSVPSTLEKHMR 439
E+C+ +++ L RH T + V+RC C + FS L +H+R
Sbjct: 583 EICNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLR 632
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 0.89
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 201 FRRPSLDFNKGFWRRPLPLFL 139
F R S ++K FWRRPLP L
Sbjct: 17 FIRRSSQYHKPFWRRPLPATL 37
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 608 RRMVRFVYDLRRSGWEAQAAAGVAHPTGRVTRPR 507
R+MV + L R+GW AQ + + R+ PR
Sbjct: 284 RKMVGILIHLTRTGWNAQVLLNTFNNSYRIRIPR 317
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 281 KPYKCELCSYACAQSSKLTRHMKTHGRL 364
KPY+CE+CS + L H +TH L
Sbjct: 397 KPYRCEVCSKRYKNLNGLKYH-RTHSHL 423
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHR-RSH 271
CE C K +KN + L HR SH
Sbjct: 401 CEVCSKRYKNLNGLKYHRTHSH 422
>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 170 GSGEGRYRCF*GLQIYFQEVSGHAMWEATIP 78
G G Y G+ I Q+ G A W ATIP
Sbjct: 196 GEGVTAYVIDTGINIEHQDFQGRATWGATIP 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,758
Number of Sequences: 5004
Number of extensions: 65827
Number of successful extensions: 206
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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