Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30398
(724 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 55 4e-08
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 47 1e-05
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 45 4e-05
At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ... 41 0.001
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 38 0.007
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 38 0.009
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 37 0.012
At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein ... 37 0.016
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ... 36 0.027
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 36 0.027
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 36 0.036
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 36 0.036
At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein ... 36 0.036
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ... 35 0.047
At3g27970.1 68416.m03491 exonuclease family protein contains exo... 35 0.047
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 33 0.14
At5g54360.1 68418.m06769 zinc finger (C2H2 type) family protein-... 33 0.19
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ... 33 0.19
At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein ... 33 0.19
At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein ... 33 0.19
At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein ... 33 0.25
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 33 0.25
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 33 0.25
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 33 0.25
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 32 0.33
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ... 32 0.33
At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein ... 32 0.44
At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein ... 32 0.44
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 31 0.58
At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein ... 31 0.77
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 31 0.77
At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein ... 31 1.0
At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein ... 31 1.0
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 30 1.4
At5g40310.1 68418.m04890 exonuclease family protein contains exo... 30 1.4
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 30 1.4
At5g59820.1 68418.m07500 zinc finger (C2H2 type) family protein ... 30 1.8
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 30 1.8
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 30 1.8
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ... 29 2.4
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 29 3.1
At1g23580.1 68414.m02968 expressed protein contains Pfam profile... 29 3.1
At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein ... 29 3.1
At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein ... 29 4.1
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 29 4.1
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 28 5.5
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ... 28 5.5
At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein ... 28 7.2
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ... 28 7.2
At5g11070.1 68418.m01293 expressed protein 28 7.2
At2g40540.1 68415.m05002 potassium transporter, putative (KT2) i... 28 7.2
At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein ... 28 7.2
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 27 9.5
At5g47280.1 68418.m05829 disease resistance protein (NBS-LRR cla... 27 9.5
At5g45330.1 68418.m05564 expressed protein ; expression supporte... 27 9.5
At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein ... 27 9.5
At2g01650.1 68415.m00091 zinc finger (C2H2 type) family protein ... 27 9.5
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Frame = +2
Query: 185 KDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTHG 358
++ N TC+ CG FK ++L H +SH+ E+ + C + C+ + + L RH+ TH
Sbjct: 60 EESSSNHTCQECGAEFKKPAHLKQHMQSHSLERSFTCYVDDCAASYRRKDHLNRHLLTH- 118
Query: 359 RLGKDVYRC--RFCEMPFSVPSTLEKHMRKCVVNQS---NGAPLALSDDSNACRDE 511
GK +++C C+ FSV + +H++K N + + L D N C+ +
Sbjct: 119 -KGK-LFKCPKENCKSEFSVQGNVGRHVKKYHSNDNRDKDNTGLGDGDKDNTCKGD 172
Score = 32.7 bits (71), Expect = 0.25
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Frame = +2
Query: 134 GLKNSGNGLLQNPLLKSKDGRRNDTCEF--CGKVFKNCSNLTVHRRSHTGEKPYKCELCS 307
G N+GNG Q + G++ C+ CGK FK S L H+ SH +
Sbjct: 194 GKDNNGNGDSQPA--ECSTGQKQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSE 251
Query: 308 YACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 439
C + +K+H R C C + +++H+R
Sbjct: 252 PGCMKYFTNEECLKSHIRSCHQHINCEICGSK-HLKKNIKRHLR 294
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +2
Query: 194 RRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCEL--CSYACAQSSKLTRHMKTHGRLG 367
R T E CGK F+ L +H+R H E+P++C CS T H++ H G
Sbjct: 1237 RNRCTHEGCGKKFRAHKYLVLHQRVHKDERPFECSWKGCSMTFKWQWARTEHLRLH--TG 1294
Query: 368 KDVYRCRF--CEMPFSVPSTLEKHMRK 442
+ Y C+ C + F S +H RK
Sbjct: 1295 ERPYICKVDGCGLSFRFVSDYSRHRRK 1321
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 45.2 bits (102), Expect = 4e-05
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = +2
Query: 191 GRRNDTC--EFCGKVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTHG 358
G R C E CGK F + S L H HTGE+ Y C E C A + L HMKTH
Sbjct: 104 GERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMKTHS 163
Query: 359 RLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSNG 466
+ + C ++ L+ H+ ++ NG
Sbjct: 164 QENYHICPYSGCVKRYAHEYKLKNHV--AAYHEKNG 197
>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 314
Score = 40.7 bits (91), Expect = 0.001
Identities = 32/102 (31%), Positives = 39/102 (38%)
Frame = +2
Query: 179 KSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHG 358
KS R CE CGKVFK+ L HR SH K AC ++ G
Sbjct: 186 KSSKSRGRFKCETCGKVFKSYQALGGHRASHKKNK---------ACMTKTEQVETEYVLG 236
Query: 359 RLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSNGAPLALS 484
K V+ C C F+ L H R N G L++S
Sbjct: 237 VKEKKVHECPICFRVFTSGQALGGHKRSHGSNIGAGRGLSVS 278
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/67 (34%), Positives = 30/67 (44%)
Frame = +2
Query: 260 RRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 439
RR H+ K + CE CS A S H+KT G G + C C FS + +H
Sbjct: 139 RRKHSNHKQWICERCSKGYAVQSDYKAHLKTCGTRG---HSCD-CGRVFSRVESFIEHQD 194
Query: 440 KCVVNQS 460
C V +S
Sbjct: 195 TCTVRRS 201
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH 271
CE C + F+ NL +HRR H
Sbjct: 72 CEICNQGFQRDQNLQMHRRRH 92
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 37.5 bits (83), Expect = 0.009
Identities = 25/95 (26%), Positives = 39/95 (41%)
Frame = +2
Query: 155 GLLQNPLLKSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKL 334
G+L+ P G +N+ K K+ L H + G KP+ C +C A A
Sbjct: 218 GMLRLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGSKPFACRMCGKAFAVKGDW 277
Query: 335 TRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 439
H K G+L + C C F +L+ H++
Sbjct: 278 RTHEKNCGKL----WYCS-CGSDFKHKRSLKDHVK 307
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +2
Query: 218 CGKVFKNCSNLTVHRRSHTGEKPYKC--ELCSYACAQSSKLTRHMKTHGRLGKDVYRCR- 388
CGK F + L H+R H+ ++P KC + C + T H++ H G Y C
Sbjct: 1267 CGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVH--TGARPYVCAE 1324
Query: 389 -FCEMPFSVPSTLEKHMRK 442
C F S +H RK
Sbjct: 1325 PDCGQTFRFVSDFSRHKRK 1343
Score = 31.9 bits (69), Expect = 0.44
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = +2
Query: 158 LLQNPLLKSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLT 337
L+Q+ + S D + C FK + T H R HTG +PY C C Q+ +
Sbjct: 1277 LVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTGARPYVC--AEPDCGQTFRFV 1334
Query: 338 RHMKTHGR 361
H R
Sbjct: 1335 SDFSRHKR 1342
>At1g25250.1 68414.m03133 zinc finger (C2H2 type) family protein
contains zinc finger, C2H2 type, domain, PROSITE:PS00028
Length = 362
Score = 36.7 bits (81), Expect = 0.016
Identities = 22/66 (33%), Positives = 29/66 (43%)
Frame = +2
Query: 260 RRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 439
RR H+ K + CE CS A S H+KT G G + C C FS + +H
Sbjct: 109 RRKHSVHKQWVCERCSKGYAVQSDYKAHLKTCGSRG---HSCD-CGRVFSRVESFIEHQD 164
Query: 440 KCVVNQ 457
C + Q
Sbjct: 165 TCTIRQ 170
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH 271
CE C + F+ NL +HRR H
Sbjct: 41 CEICNQGFQRDQNLQMHRRRH 61
>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 503
Score = 35.9 bits (79), Expect = 0.027
Identities = 26/80 (32%), Positives = 34/80 (42%)
Frame = +2
Query: 257 HRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHM 436
+ R H GEK +KCE CS A S H KT G Y+C C FS + H
Sbjct: 150 YSRKH-GEKKWKCEKCSKKYAVQSDWKAHAKT---CGTREYKCD-CGTLFSRKDSFITHR 204
Query: 437 RKCVVNQSNGAPLALSDDSN 496
C GA ++ ++N
Sbjct: 205 AFCDALTEEGARMSSLSNNN 224
Score = 32.7 bits (71), Expect = 0.25
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHT--------------GEKPYKCEL--CSY--ACAQSSKL 334
CE C K F+ NL +HRR H +K Y C + C + A L
Sbjct: 84 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDL 143
Query: 335 TRHMKTHGRL-GKDVYRCRFCEMPFSVPSTLEKHMRKC 445
T K + R G+ ++C C ++V S + H + C
Sbjct: 144 TGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTC 181
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/71 (30%), Positives = 30/71 (42%)
Frame = +2
Query: 260 RRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 439
RR H+ K + CE CS A S H+KT G G + C C FS + +H
Sbjct: 136 RRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRG---HSCD-CGRVFSRVESFIEHQD 191
Query: 440 KCVVNQSNGAP 472
C + + P
Sbjct: 192 NCSARRVHREP 202
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH 271
CE C + F+ NL +HRR H
Sbjct: 69 CEICNQGFQRDQNLQMHRRRH 89
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 35.5 bits (78), Expect = 0.036
Identities = 26/95 (27%), Positives = 38/95 (40%)
Frame = +2
Query: 155 GLLQNPLLKSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKL 334
G+L+ P G RN+ K K+ L H + G KP+ C C A A
Sbjct: 257 GMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDW 316
Query: 335 TRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 439
H K G+L + C C F +L+ H++
Sbjct: 317 RTHEKNCGKL----WYC-ICGSDFKHKRSLKDHIK 346
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 35.5 bits (78), Expect = 0.036
Identities = 25/94 (26%), Positives = 38/94 (40%)
Frame = +2
Query: 158 LLQNPLLKSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLT 337
+L+ P +G +N+ K K+ L H + G KP+ C C A A
Sbjct: 222 ILRLPCYCCAEGCKNNINHPRSKPLKDFRTLQTHYKRKHGSKPFSCGKCGKALAVKGDWR 281
Query: 338 RHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 439
H K G+L + C C F +L+ H+R
Sbjct: 282 THEKNCGKL----WYCT-CGSDFKHKRSLKDHIR 310
>At1g03840.1 68414.m00365 zinc finger (C2H2 type) family protein
contains Zinc finger,C2H2 type,domain contains Pfam
domain, PF00096: Zinc finger, C2H2 type
Length = 506
Score = 35.5 bits (78), Expect = 0.036
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 20/99 (20%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCS--------YACAQSSKLTRH------- 343
CE CGK F+ NL +HRR H P+K + + Y C + S + H
Sbjct: 72 CEICGKGFQRDQNLQLHRRGH--NLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGD 129
Query: 344 ---MKTH--GRLGKDVYRCRFCEMPFSVPSTLEKHMRKC 445
+K H + G+ ++C C ++V S + H + C
Sbjct: 130 LTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTC 168
Score = 31.9 bits (69), Expect = 0.44
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +2
Query: 263 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 442
R H GEK +KCE C+ A S H KT G YRC C FS + H
Sbjct: 139 RKH-GEKKWKCEKCAKRYAVQSDWKAHSKT---CGTREYRCD-CGTIFSRRDSFITHRAF 193
Query: 443 C 445
C
Sbjct: 194 C 194
>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
similar to potato PCP1 zinc finger protein, GenBank
accession number X82328 contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 402
Score = 35.1 bits (77), Expect = 0.047
Identities = 29/78 (37%), Positives = 32/78 (41%)
Frame = +2
Query: 263 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 442
R H GEK +KCE CS A S H K G +D YRC C FS T H
Sbjct: 152 RKH-GEKKWKCEKCSKFYAVQSDWKAHTKICGT--RD-YRCD-CGTLFSRKDTFITHRAF 206
Query: 443 CVVNQSNGAPLALSDDSN 496
C A L + SN
Sbjct: 207 CDALAEESARLHSTSSSN 224
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH 271
CE C K F+ NL +HRR H
Sbjct: 84 CEICNKGFQRDQNLQLHRRGH 104
>At3g27970.1 68416.m03491 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 354
Score = 35.1 bits (77), Expect = 0.047
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Frame = +2
Query: 176 LKSKDGRRNDTCEFCGKVFKNCSNLTVHRRS--HTGEKPYKCELCSYACAQSSKLTRHM- 346
++S + RN C C + F +L H + H+G +P C +C C L H+
Sbjct: 7 MESSETLRNK-CAACYRQFNKLEHLVEHMKISYHSGHEP-TCGVCKKHCRSFESLREHLI 64
Query: 347 -KTHGRLGKDVYR---CRFCEMPFSVPSTLEKHMRKC 445
+ K+++ CRFC P++ H +C
Sbjct: 65 GPLPKQECKNIFSLRGCRFCMTILESPNSRRIHQERC 101
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 221 GKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHM 346
G + +N N+ H TGE C +C+ C K T H+
Sbjct: 221 GSLQENRKNMLQHSSGATGESATTCRICNVVCDSFEKFTAHL 262
>At5g54360.1 68418.m06769 zinc finger (C2H2 type) family
protein-related contains Prosite:PS00028: Zinc finger,
C2H2 type, domain.
Length = 270
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 185 KDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEK 283
KD + + TC FC + FK+C L H + H E+
Sbjct: 75 KDNKISHTCRFCKRNFKSCFALGGHMKCHKKER 107
>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 373
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 355
C+ CGK FK +NL +H R+H E + L S +Q K +K H
Sbjct: 219 CQICGKGFKRDANLRMHMRAHGDEYKTREALIS-PTSQDKKGGYSLKKH 266
>At3g29340.1 68416.m03684 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 650
Score = 33.1 bits (72), Expect = 0.19
Identities = 27/113 (23%), Positives = 46/113 (40%)
Frame = +2
Query: 176 LKSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTH 355
L+SK + C+ CGK F+ L H+R H +P K +L ++ ++
Sbjct: 37 LQSKSSHK---CKICGKSFECYQALGGHQRIH---RPIKEKLSKQEFSEVYPRKSKLQKR 90
Query: 356 GRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSNGAPLALSDDSNACRDEA 514
Y C+ C F L H + +++S LA + D N+ D +
Sbjct: 91 PESSSSCYECKVCGKIFGCYRGLGGHTK---LHRSTKRELASTQDENSLLDSS 140
>At2g02080.1 68415.m00144 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 516
Score = 33.1 bits (72), Expect = 0.19
Identities = 24/61 (39%), Positives = 26/61 (42%)
Frame = +2
Query: 263 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 442
R H GEK +KCE CS A S H KT G YRC C FS + H
Sbjct: 152 RKH-GEKKWKCEKCSKRYAVQSDWKAHSKT---CGTKEYRCD-CGTIFSRRDSYITHRAF 206
Query: 443 C 445
C
Sbjct: 207 C 207
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 20/99 (20%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH----------TGEKPYKCELC----------SYACAQSS 328
C+ C K F+ NL +HRR H T E K LC S A +
Sbjct: 85 CDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLT 144
Query: 329 KLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKC 445
+ +H + + G+ ++C C ++V S + H + C
Sbjct: 145 GIKKHY--YRKHGEKKWKCEKCSKRYAVQSDWKAHSKTC 181
>At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 466
Score = 32.7 bits (71), Expect = 0.25
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 20/99 (20%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCS--------YACAQSSKLTRH------- 343
CE CGK F+ NL +HRR H P+K + + Y C + + + H
Sbjct: 68 CEVCGKGFQRDQNLQLHRRGH--NLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGD 125
Query: 344 ---MKTH--GRLGKDVYRCRFCEMPFSVPSTLEKHMRKC 445
+K H + G+ + C C ++V S + H + C
Sbjct: 126 LTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTC 164
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/61 (36%), Positives = 25/61 (40%)
Frame = +2
Query: 263 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 442
R H GEK + CE C+ A S H KT G YRC C FS + H
Sbjct: 135 RKH-GEKKWTCEKCAKRYAVQSDWKAHSKT---CGTREYRCD-CGTIFSRRDSFITHRAF 189
Query: 443 C 445
C
Sbjct: 190 C 190
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 185 KDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLT 337
K G + TCE C K + S+ H ++ G + Y+C+ + + S +T
Sbjct: 136 KHGEKKWTCEKCAKRYAVQSDWKAHSKT-CGTREYRCDCGTIFSRRDSFIT 185
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 32.7 bits (71), Expect = 0.25
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +2
Query: 263 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 442
R H GEK +KC+ CS A S H KT G YRC C FS + H
Sbjct: 169 RKH-GEKKWKCDKCSKKYAVQSDCKAHSKT---CGTKEYRCD-CGTLFSRRDSFITHRAF 223
Query: 443 C 445
C
Sbjct: 224 C 224
Score = 30.7 bits (66), Expect = 1.0
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCS---------YACAQSSKLTRH------ 343
CE C K F+ NL +HRR H P+K + S Y C ++S +
Sbjct: 101 CEICNKGFQRDQNLQLHRRGH--NLPWKLKQRSNKEVIRKKVYVCPEASCVHHDPSRALG 158
Query: 344 ----MKTH--GRLGKDVYRCRFCEMPFSVPSTLEKHMRKC 445
+K H + G+ ++C C ++V S + H + C
Sbjct: 159 DLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDCKAHSKTC 198
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 32.7 bits (71), Expect = 0.25
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Frame = +2
Query: 134 GLKNSGNGLLQNPLLKSKDGRRNDTCEF--CGKVFKNCSNLTVHRRSHTGEKPYKCELCS 307
G N+GNG Q + G++ C+ CGK FK S L H+ SH +
Sbjct: 106 GKDNNGNGDSQPA--ECSTGQKQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSE 163
Query: 308 YACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 439
C + +K+H R C C + +++H+R
Sbjct: 164 PGCMKYFTNEECLKSHIRSCHQHINCEICGSK-HLKKNIKRHLR 206
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 32.7 bits (71), Expect = 0.25
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Frame = +2
Query: 131 EGLKNSG-NGLLQNPLLKSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCS 307
E LK + +L P +G RN K K+ L H + G KP+ C LC
Sbjct: 176 ESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCG 235
Query: 308 YACAQSSKLTRHMKTHGR 361
A H K G+
Sbjct: 236 KLLAVKGDWRTHEKNCGK 253
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 32.3 bits (70), Expect = 0.33
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +2
Query: 263 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 442
R H GEK +KC+ CS A S H KT G YRC C FS + H
Sbjct: 150 RKH-GEKKWKCDKCSKRYAVQSDWKAHSKT---CGTKEYRCD-CGTLFSRRDSFITHRAF 204
Query: 443 C 445
C
Sbjct: 205 C 205
Score = 30.3 bits (65), Expect = 1.4
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH----------TGEKPYKCELC-SYACAQS------SKLT 337
CE C K F+ NL +HRR H T E K LC +C LT
Sbjct: 83 CEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPSCVHHDPSRALGDLT 142
Query: 338 RHMKTHGRL-GKDVYRCRFCEMPFSVPSTLEKHMRKC 445
K + R G+ ++C C ++V S + H + C
Sbjct: 143 GIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTC 179
>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 32.3 bits (70), Expect = 0.33
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +2
Query: 263 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 442
R H GEK +KCE CS A S H KT G Y+C C FS + H
Sbjct: 162 RKH-GEKKWKCEKCSKKYAVQSDWKAHAKT---CGTKEYKCD-CGTLFSRRDSFITHRAF 216
Query: 443 C 445
C
Sbjct: 217 C 217
Score = 30.7 bits (66), Expect = 1.0
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCS---------YACAQSSKLTRH------ 343
CE C K F+ NL +H+R H P+K + S Y C + + H
Sbjct: 94 CEVCNKGFQRDQNLQLHKRGH--NLPWKLKQRSNKDVVRKKVYVCPEPGCVHHHPSRALG 151
Query: 344 ----MKTH--GRLGKDVYRCRFCEMPFSVPSTLEKHMRKC 445
+K H + G+ ++C C ++V S + H + C
Sbjct: 152 DLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHAKTC 191
>At5g61470.1 68418.m07713 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 304
Score = 31.9 bits (69), Expect = 0.44
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 20/79 (25%)
Frame = +2
Query: 179 KSKDGRRND--TCEFCGKVFKNCSNLTVHRRSHT------------GE------KPYKCE 298
K K G++ TC+ CGKV ++ L HR SH GE + Y+C+
Sbjct: 218 KRKRGKKQSKYTCDTCGKVLRSYQALGGHRTSHKYKRLKISDKNYFGEDGPIVRRQYECQ 277
Query: 299 LCSYACAQSSKLTRHMKTH 355
+C+ A L H K H
Sbjct: 278 ICNRMFASGQALGGHKKIH 296
>At1g14580.1 68414.m01734 zinc finger (C2H2 type) family protein
similar to zinc finger protein ID1 GB:AAC18941
GI:3170601 from [Zea mays] contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 467
Score = 31.9 bits (69), Expect = 0.44
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +2
Query: 263 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 442
R H GEK +KC+ CS A S H KT G YRC C FS + H
Sbjct: 151 RKH-GEKKWKCDKCSKRYAVQSDWKAHSKT---CGTKEYRCD-CGTIFSRRDSYITHRAF 205
Query: 443 C 445
C
Sbjct: 206 C 206
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH 271
CE C K F+ NL +HRR H
Sbjct: 84 CEVCNKGFQREQNLQLHRRGH 104
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH 271
CE C K FK NL +HRR H
Sbjct: 70 CEVCNKGFKRDQNLQLHRRGH 90
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/61 (36%), Positives = 25/61 (40%)
Frame = +2
Query: 263 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 442
R H GEK +KC+ CS A S H K G YRC C FS + H
Sbjct: 138 RKH-GEKKWKCDKCSKKYAVMSDWKAHSKI---CGTKEYRCD-CGTLFSRKDSFITHRAF 192
Query: 443 C 445
C
Sbjct: 193 C 193
>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 288
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH 271
CE CGKVFK+ L HR SH
Sbjct: 175 CETCGKVFKSYQALGGHRASH 195
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 31.1 bits (67), Expect = 0.77
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCR 388
C C KVF + L H+ SH+ K A A + + TR K GK +++C
Sbjct: 195 CSICEKVFTSYQALGGHKASHS----IKAAQLENAGADAGEKTR-SKMLSPSGK-IHKCD 248
Query: 389 FCEMPFSVPSTLEKHMRK 442
C + F L H R+
Sbjct: 249 ICHVLFPTGQALGGHKRR 266
>At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGE 280
C CGK FK +NL +H R H E
Sbjct: 246 CTICGKGFKRDANLRMHMRGHGDE 269
>At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 499
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGE 280
C CGK FK +NL +H R H E
Sbjct: 246 CTICGKGFKRDANLRMHMRGHGDE 269
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH 271
CE C K F+ NL +HRR H
Sbjct: 63 CEICNKGFQRDQNLQLHRRGH 83
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/61 (36%), Positives = 25/61 (40%)
Frame = +2
Query: 263 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 442
R H GEK +KCE CS A S H K G Y+C C FS + H
Sbjct: 130 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI---CGTKEYKCD-CGTLFSRRDSFITHRAF 184
Query: 443 C 445
C
Sbjct: 185 C 185
>At5g40310.1 68418.m04890 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 348
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRS--HTGEKPYKCELCSYACAQSSKLTRHM-----KTHGRLG 367
C C + F +L H R H+ +P C +C+ C L H+ K +
Sbjct: 8 CGGCYRQFNKKEHLVEHMRISYHSVHEP-TCGICNKHCRSFDSLREHLIGPLPKQECKNI 66
Query: 368 KDVYRCRFCEMPFSVPSTLEKHMRKC-VVNQSNGAPLALS 484
+ CRFC P+ H +C + N ++G + ++
Sbjct: 67 FSIRGCRFCLTILESPNARRIHQERCQLSNVTSGLMIRMA 106
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH 271
CE C K F+ NL +HRR H
Sbjct: 65 CEICNKGFQRDQNLQLHRRGH 85
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/61 (34%), Positives = 25/61 (40%)
Frame = +2
Query: 263 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 442
R H GEK +KC+ CS A S H K G Y+C C FS + H
Sbjct: 132 RKH-GEKKWKCDKCSKKYAVQSDWKAHSKI---CGTKEYKCD-CGTLFSRRDSFITHRAF 186
Query: 443 C 445
C
Sbjct: 187 C 187
>At5g59820.1 68418.m07500 zinc finger (C2H2 type) family protein
(ZAT12) identical to zinc finger protein ZAT12
[Arabidopsis thaliana] gi|1418325|emb|CAA67232
Length = 162
Score = 29.9 bits (64), Expect = 1.8
Identities = 32/98 (32%), Positives = 43/98 (43%)
Frame = +2
Query: 188 DGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLG 367
D +R TC+ C K F + L HR SH +KP L SS L + +KT
Sbjct: 34 DQKRVFTCKTCLKQFHSFQALGGHRASH--KKPNNDAL-------SSGLMKKVKTSS--- 81
Query: 368 KDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSNGAPLAL 481
+ C C + F + L HMR+ N+S A AL
Sbjct: 82 ---HPCPICGVEFPMGQALGGHMRR-HRNESGAAGGAL 115
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/94 (23%), Positives = 37/94 (39%)
Frame = +2
Query: 158 LLQNPLLKSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLT 337
+L+ P G +N+ + K+ L H + G +P+ C C A A
Sbjct: 297 MLKLPCYCCAPGCKNNIDHPRARPLKDFRTLQTHYKRKHGVRPFACRRCGKAFAVKGDWR 356
Query: 338 RHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMR 439
H K G+L + C C F +L+ H++
Sbjct: 357 THEKNCGKL----WYCS-CGSDFKHKRSLKDHVK 385
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/78 (26%), Positives = 30/78 (38%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCR 388
C+ C K F + L HR SH +KP K +H+ + G ++C
Sbjct: 49 CKTCNKRFSSFQALGGHRASH--KKP--------KLTVEQKDVKHLSNDYK-GNHFHKCS 97
Query: 389 FCEMPFSVPSTLEKHMRK 442
C F L HMR+
Sbjct: 98 ICSQSFGTGQALGGHMRR 115
>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 253
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Frame = +2
Query: 311 ACAQSSKLTRHMKTHGRLGKD----VYRCRFCEMPFSVPSTLEKHMRK 442
A + S + K + GKD VY CRFC + F L HM +
Sbjct: 25 ALEEGSSSGQRKKKGSKEGKDESGKVYECRFCSLKFCKSQALGGHMNR 72
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 234 LNTLPQNSQVSFRRPSLDFNKGFWRRPLPLFLRPSNIFSG 115
L+T P N + S++FN+G + L L+ R +F G
Sbjct: 155 LDTAPDNVPALLGQASVEFNRGRFSESLQLYKRALQVFPG 194
>At1g23580.1 68414.m02968 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220
Length = 285
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 113 PPENIFEGLKNSGNGLLQNPLLKSK 187
PP+ +FE N NG PLLKSK
Sbjct: 96 PPDGVFELFTNPHNGPNTEPLLKSK 120
>At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 211
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSHTGEKPYKCEL 301
C++CGK F N L H+ +H E+ K L
Sbjct: 62 CQYCGKEFANSQALGGHQNAHKKERLKKKRL 92
>At5g60470.1 68418.m07584 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 392
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH 271
CE C K F+ NL +H+R H
Sbjct: 8 CEICNKGFQREQNLQLHKRGH 28
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/63 (34%), Positives = 26/63 (41%)
Frame = +2
Query: 263 RSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRK 442
R H GEK +KC+ CS A S H K G +RC C FS + H
Sbjct: 76 RKH-GEKKWKCDKCSKKYAVISDWKAHNKI---CGSREFRCD-CGTLFSRKDSFISHRSF 130
Query: 443 CVV 451
C V
Sbjct: 131 CDV 133
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 28.7 bits (61), Expect = 4.1
Identities = 26/137 (18%), Positives = 50/137 (36%)
Frame = +2
Query: 65 MERSEGWWLPTLHAQRPPENIFEGLKNSGNGLLQNPLLKSKDGRRNDTCEFCGKVFKNCS 244
ME+ G+W+P + ++ G L P R+ TC FC + FK+
Sbjct: 1 MEKPGGFWIPKKSNKESSWEELAFAEDDAAGSLWPP--------RSYTCSFCRREFKSAQ 52
Query: 245 NLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTL 424
L H H ++ + S + +H + +++ + F+
Sbjct: 53 ALGGHMNVHRRDRARLKQADDQYLFPKSSSSPEYPSH-KDSDNIHETSCYTLVFNTKPNY 111
Query: 425 EKHMRKCVVNQSNGAPL 475
K CV++ S+ + L
Sbjct: 112 FKTQHSCVIDLSSSSSL 128
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 432 CFSKVEGTEKGISQNLHRYTSLPSR 358
C+SK++ E G S N++R + P R
Sbjct: 656 CYSKLKAAESGYSSNVNRNVATPGR 680
>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 455
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +2
Query: 164 QNPLLKSKDGRRNDT----CEFCGKVFKNCSNLTVHRRSH 271
++P++K +G + + C C +VFK+ L H+RSH
Sbjct: 382 KSPMVKKANGAKKKSKGHECPICFRVFKSGQALGGHKRSH 421
>At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 137
Score = 27.9 bits (59), Expect = 7.2
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Frame = +2
Query: 290 KCELCSYACAQSSKLTRHMKTHGR----LGKDVYRCRFCEMPFSVPSTLEKHM---RKCV 448
+CE S + + + RH +T + + +Y C FC+ F+ L HM R+
Sbjct: 2 ECERSSSSTSSETGAVRHRRTSSSSVSTVTRRMYECTFCKRGFTNAQALGGHMNIHRRDR 61
Query: 449 VNQS---NGAPLALSDDSNACRDEAS 517
+N++ N A +ALS ++ C AS
Sbjct: 62 LNKAKVQNDADVALS-QTHRCFHVAS 86
>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 594
Score = 27.9 bits (59), Expect = 7.2
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Frame = +2
Query: 185 KDGRRNDTCEFCG-KVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGR 361
++G C CG V K C+ + +H + + L ++ Q ++ + +
Sbjct: 74 ENGLHGYNCNTCGLTVHKECAESSPEI-NHPSHQRHPLMLLTHGLPQEAEDDKCRLCGEK 132
Query: 362 LGKDVYRCRFCEMPFSV-----PSTLEKHMRKCVVNQSNGAPLALSDDSNAC 502
+GK VY C C+ + P +L + RK + P + NAC
Sbjct: 133 VGKLVYHCSICDFSLDLFCARNPLSLVVYFRKGHEHTLTLMPRLIRFTCNAC 184
>At5g11070.1 68418.m01293 expressed protein
Length = 152
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +2
Query: 107 QRPPENIFEGLKNSGNGLLQNPLLKSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKP 286
QR P + +E LK++ L + R TC + NC + H +S+ G+
Sbjct: 46 QRTPRSPYEWLKSTAQELELRDRCRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGDFS 105
Query: 287 Y 289
Y
Sbjct: 106 Y 106
>At2g40540.1 68415.m05002 potassium transporter, putative (KT2)
identical to putative potassium transporter AtKT2p
[Arabidopsis thaliana] gi|2384671|gb|AAC49845, strong
similarity to potassium transporter HAK2p
[Mesembryanthemum crystallinum] GI:14091471; KUP/HAK/KT
Transporter family member, PMID:11500563
Length = 794
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 429 FSKVEGTEKGISQNLHRYTSLPSRP*VFMCLVSFE 325
FS V G E +S+ H+Y +P + +CL S +
Sbjct: 177 FSAVSGLELNMSKEHHQYAVIPITCFILVCLFSLQ 211
>At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein
identical to C2H2 zinc finger protein ZAT1 [Arabidopsis
thaliana] gi|1418321|emb|CAA67227; contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 267
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 209 CEFCGKVFKNCSNLTVHRRSH 271
CE C KVFK+ L HR SH
Sbjct: 162 CETCEKVFKSYQALGGHRASH 182
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 179 KSKDGRRNDTCEFCGKVFKNCSNLTVHRRSH 271
K K + C C KVF + L H+RSH
Sbjct: 201 KKKSTSSHHECPICAKVFTSGQALGGHKRSH 231
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 91 KPPSLTSLHIQFHSLRSFERIFKRV 17
KP H+ FH+ R ERIF RV
Sbjct: 624 KPRETERDHLTFHTFRDMERIFIRV 648
>At5g47280.1 68418.m05829 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 623
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +2
Query: 389 FCEMPF---SVPSTLEKHMRKCVVNQSNGAPLAL 481
FC F SVPS K + K VV +S G PL+L
Sbjct: 139 FCLSAFNQKSVPSGFSKSLVKQVVGESKGLPLSL 172
>At5g45330.1 68418.m05564 expressed protein ; expression supported
by MPSS
Length = 571
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 519 DSTRGVGYACRRLRLPARSSKIINKPHHSSLPI 617
DS G+G + + PA SSK + HSS+P+
Sbjct: 142 DSGYGLGRGSQWINTPALSSKPVPVTQHSSVPL 174
>At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein
weak similarity to S-locus protein 4 (GI:6069478)
[Brassica rapa]; weak similarity to Pre-mRNA cleavage
complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913)
[Homo sapiens]; contains Prosite PS00028: Zinc finger,
C2H2 type, domain
Length = 828
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 284 PYKCELCSYACAQSSKLTRHMKTHGR 361
P+ C CS Q +L RHM+ H +
Sbjct: 678 PHLCTSCSVRLKQKEELDRHMELHDK 703
>At2g01650.1 68415.m00091 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 458
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/55 (20%), Positives = 24/55 (43%)
Frame = +2
Query: 332 LTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSNGAPLALSDDSN 496
+T ++ ++ C C+ PF+ + H+ C + +NG + D+N
Sbjct: 106 ITSSNRSQNGYSLSMFECPICKNPFTSEEEVSVHVESC-LGDTNGDESSFEKDNN 159
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,339,840
Number of Sequences: 28952
Number of extensions: 367553
Number of successful extensions: 1196
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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