Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30397
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23454-6|AAC46521.1|  192|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical...    28   5.5  
U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine rece...    27   7.3  

>U23454-6|AAC46521.1|  192|Caenorhabditis elegans Hypothetical
           protein C10A4.7 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -2

Query: 284 LNVISFL*HVLNLIRTFILIVLCSILFKFTRITMIKN--LNNVIKCIITN 141
           L+ +SF    + ++ T + I+   ILF F  IT+ KN  +N+ I  I+TN
Sbjct: 63  LSCVSF---TIGVVITSVQILNSRILFAFLLITIFKNIFINSSILLIVTN 109


>AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical
           protein C31B8.1 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 112 NNIYSK*LNQFVMIHLITLLRFFII-VILVNLKSILHSTIKIKVL 243
           +N Y K L    M+H++  L FFI+  +L+ LK  L+ T+ +  L
Sbjct: 126 SNKYHKRLLFEFMVHIMISLPFFILSPLLIFLKIFLNDTVDVSFL 170


>U97008-5|AAB52311.2|  338|Caenorhabditis elegans Serpentine
           receptor, class h protein231 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 561 YFYFRN*XIN*SMIFINLLVHSFANFVIMI 472
           YF ++N   N ++IF++L +H  A+ +IM+
Sbjct: 261 YFRYQNQIFN-NLIFVSLAIHGIASTLIMV 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,145,413
Number of Sequences: 27780
Number of extensions: 181318
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)