Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30397
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.2  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   2.9  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      23   2.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +1

Query: 427 IYLKKYFYINMQI 465
           +YL+KYFY+ M++
Sbjct: 533 VYLQKYFYLFMEM 545


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +1

Query: 427 IYLKKYFYINMQI 465
           +YL+KYFY+ M++
Sbjct: 533 VYLQKYFYLFMEM 545


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 154 HLITLLRFFIIVILVNLKS 210
           HLIT+L F  +VIL+ + S
Sbjct: 10  HLITVLLFSFVVILLIIPS 28


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 154 HLITLLRFFIIVILVNLKS 210
           HLIT+L F  +VIL+ + S
Sbjct: 10  HLITVLLFSFVVILLIIPS 28


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 358 NLLSXYNK*FKKVTNIHSQILSFIYLK 438
           +LLS YNK  + V N+   +   I LK
Sbjct: 31  DLLSNYNKLVRPVVNVTDALTVKIKLK 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,323
Number of Sequences: 438
Number of extensions: 2340
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)