Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30394
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 64 2e-11
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 53 5e-08
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 46 6e-06
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 38 0.002
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 35 0.011
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 32 0.099
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 29 0.70
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 27 3.7
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 27 3.7
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 3.7
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 26 4.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.5
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr... 25 8.6
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 25 8.6
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 64.1 bits (149), Expect = 2e-11
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Frame = +1
Query: 163 KLIDDNGAEVGPGSNGELYVKGECVVKGYYKNKEAYSESFV-DGWYKTGDWFHLDENERL 339
K++D G E+ G GE+ V+G V KGY N A SF D +++TGD LD++ +
Sbjct: 339 KILDQKGNEMPQGKEGEICVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYV 398
Query: 340 HFLERRKFNFKFRGCHVSPEEVEGVIGKLPGVHESVVVATDNGP-----AAAVVLLLEYD 504
R K G +SP E++ V+ + P V E+V A + AA+ +
Sbjct: 399 FITGRIKELVNRGGEKISPAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAAINPVAGKT 458
Query: 505 LTREDINKAVDSTLSDHKRLHGGIAFVDSLPHTHSGKLKR 624
+T + ++ ++ ++ K + F D +P T +GK++R
Sbjct: 459 VTPKQLHDYLEQKVAAFK-IPKKFYFTDRIPKTATGKVQR 497
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 52.8 bits (121), Expect = 5e-08
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Frame = +1
Query: 67 GYGTTET--QGFIAVTDR-DAEASSNGWVYNILHYKLID--DNGAEVGPGS-NGELYVKG 228
GYG TET F+ ++ A++ G+ + +KL+D D G GE++++G
Sbjct: 438 GYGLTETCAGSFVLSPEQWHLYANTVGFPIPSIEFKLVDIPDLGYYTDSSPPRGEVWIRG 497
Query: 229 ECVVKGYYKNKEAYSESFV-DGWYKTGDWFHLDENERLHFLERRKFNFK-FRGCHVSPEE 402
V GY E +F DGW+KTGD + + L ++R+K K G +++ E+
Sbjct: 498 PAVCNGYLNRPEDNKAAFTEDGWFKTGDVGEIAKGNTLRLIDRKKNIVKSLNGEYIALEK 557
Query: 403 VEGVIGKLPGVHESVVVATDNGPAAAVVLL 492
+E P V +V D A VV++
Sbjct: 558 IEAQFFTSPLV-SNVCAYADVNHAKPVVIV 586
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 46.0 bits (104), Expect = 6e-06
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Frame = +1
Query: 67 GYGTTETQGFIAVTDRDAEA--SSNGWVYNILHYKLID---DNGAEVGPGSNGELYVKGE 231
GYG TE V + S G + KL+D N G GE++++G
Sbjct: 432 GYGLTEISAAAMVQNPACFNLDDSAGSLLPCTEMKLVDCEEGNYNSHGHPPRGEIWLRGP 491
Query: 232 CVVKGYYKNKEAYSESFV-DGWYKTGDWFHLDENERLHFLERRKFNFKFR-GCHVSPEEV 405
+ +GY + ESF DGW++TGD L L ++R+K K + G +++ E++
Sbjct: 492 SLTRGYLNRDKENKESFTPDGWFRTGDVGELTPEGLLRIIDRKKNLVKTQNGEYIALEKL 551
Query: 406 E 408
E
Sbjct: 552 E 552
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 37.5 bits (83), Expect = 0.002
Identities = 46/147 (31%), Positives = 61/147 (41%), Gaps = 15/147 (10%)
Frame = +1
Query: 58 LCNGYGTTE-TQGFIAV--TDRDAEASSNGWVY-NILHYKLIDDNGAEVGPGSNGELYVK 225
L N +G TE T G A ++A+ S+ G + N Y L + V G GE+ +
Sbjct: 3007 LYNFWGPTELTIGASAFRKVPKNAKVSNIGPPFPNCSTYILSKETKVPVLLGGLGEICMG 3066
Query: 226 GECVVKGYYKNKEA------YSESFVDGWYKTGDWFH-LDENERLHFLERRKFNFKFRGC 384
G V KGY E + F D Y TGD L +N L F R K RG
Sbjct: 3067 GNQVAKGYLNLPEQTDAKFYFDRRFNDRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQ 3126
Query: 385 HVSPEEVEGVI----GKLPGVHESVVV 453
+ E+ VI K+ GV+ VV
Sbjct: 3127 RIEIGEINAVIKSSSEKILGVYTLAVV 3153
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 35.1 bits (77), Expect = 0.011
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 8/169 (4%)
Frame = +1
Query: 163 KLIDDNGAEVGPGSNGELYVKGECVVKGYYKNKEAYSESFVDGWYKTGDWFHLDENERLH 342
K+I+ N E V +G+ + + Y + + G+Y TGD D++ +
Sbjct: 463 KIIEGNDVEGVLAIRSPWPSAARTVWRGHDRYIDTYLKPY-PGFYFTGDGATRDKDGYIW 521
Query: 343 FLERRKFNFKFRGCHVSPEEVEGVIGKLPGVHESVVVATDN---GPAAAVVLLLE--YDL 507
R G +S E+E + V ES VV + G A +LL+ Y+
Sbjct: 522 IRGRVDDVVNISGHRLSTAEIEAALLSHDAVAESAVVGVHDELTGQAVNAFILLKPGYEA 581
Query: 508 TRE---DINKAVDSTLSDHKRLHGGIAFVDSLPHTHSGKLKRMECKKLI 645
T E ++ AV ST+ + F D LP T SGK+ R +K++
Sbjct: 582 TVELEKELIMAVRSTIGPFASPR-KLIFSD-LPKTRSGKIMRRILRKIL 628
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 31.9 bits (69), Expect = 0.099
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 175 DNGAEVGPGSNGELYVKGECVVKGYYKNKEAYSESFVDGWY 297
D G G GE+Y++ + +GY N E S+ F+ W+
Sbjct: 653 DTNKICGIGEVGEIYLRAGGLAEGYLGNDELTSKKFLKSWF 693
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 524 LISSLVRSYSSKRTTAAAGPLSVATTTLSCTPGNLPMTPS 405
+ S + + + R + A +SVA LS TP + P TPS
Sbjct: 386 VFSRVTKYIKAARRASTANRVSVAKDRLSLTPSSTPSTPS 425
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 36 ETTPRYTFM*WIWDHRDTRIHRCDRQR 116
E P YT ++++ DTR+ RC QR
Sbjct: 111 ELLPYYTSKIFVYEDADTRLERCVLQR 137
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 384 TTPEFEIEFPPLQKVKAFVLIQMEPVS-RFVP 292
T E E EFPP++K+ +L QM V+ +VP
Sbjct: 499 TEEEVEFEFPPVEKISPPIL-QMSDVNFEYVP 529
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = -1
Query: 551 SLSVESTALLISSLVRSYSSKRTTAAAGPLSVATTTLSCTPGNLPMTPSTSS 396
S S S++ SS S SS +++++ S ++++ S + ++P+T STSS
Sbjct: 165 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSS 216
>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 361 ISSSPKSEGVRSHPNGTSLPFCTNRPQ 281
ISSS E VRS P +PF TN P+
Sbjct: 256 ISSSRAQEYVRSLPKQRPIPFETNFPK 282
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = -1
Query: 587 STNAMPPCNLL*SLSVESTALLISSLVRSYSSKRTTAAAGPLSVATTTLSCTPGNLPMTP 408
S+ + N + S ST L SS+ + S+ T+ ++ PLS +T + + + P+T
Sbjct: 304 SSTPLTSVNSTTTTSASSTPL--SSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTS 361
Query: 407 STSSGDT 387
S+ T
Sbjct: 362 VNSTTAT 368
Score = 25.4 bits (53), Expect = 8.6
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = -1
Query: 593 NESTNAMPPCNLL*SLSVESTALLISSLVRSYSSKRTTAAAGPLSVATTTLSCTPGNLPM 414
N +T+A + L S + ++A SSL S + T+A A S+++T S TP +
Sbjct: 201 NSTTSATATSSSLSSTAASNSATS-SSLASSSLNSTTSATATSSSISSTVSSSTP----L 255
Query: 413 TPSTSS 396
T S S+
Sbjct: 256 TSSNST 261
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -1
Query: 545 SVESTALLISSLVRSYSSKRTTAAAGPLSVATTTLSCTPGNLPMTPSTSSGDT 387
S +T+ + L S+ T+A++ PL+ +T + + + P+T + S+ T
Sbjct: 348 STTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTST 400
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -1
Query: 545 SVESTALLISSLVRSYSSKRTTAAAGPLSVATTTLSCTPGNLPMTPSTSSGDT 387
S +T+ + L S+ T+A++ PL+ +T + + + P+T + S+ T
Sbjct: 462 STTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTST 514
>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 458
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 229 RL*RKVHHYSLDPLQRHYHRSTCNVKYYTP 140
+L +H Y LDP+ + H S Y+ P
Sbjct: 87 KLQHAIHPYELDPVSKQAHPSLAVKAYHRP 116
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -1
Query: 530 ALLISSLVRSYSSKRTTAAAGPLSVATTTLSCTPGNL 420
+ L +L ++S+ ++ A P+ + +L C P NL
Sbjct: 256 SFLGENLKPKFTSRSSSVYASPIKSSLNSLECNPSNL 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,996
Number of Sequences: 5004
Number of extensions: 61579
Number of successful extensions: 228
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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