Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30393
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    29   0.94 
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ...    25   8.7  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    25   8.7  

>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 65  VLIPLAGTIFCNEIRTKQMFTIDFQGEGITS 157
           V+IP AGT+   EI   +++T  F   G TS
Sbjct: 367 VVIPTAGTVTETEISGSELYTSTFPANGTTS 397



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 65  VLIPLAGTIFCNEIRTKQMFTIDFQGEGITS 157
           V+IP AGT+    +   +++T  F   G TS
Sbjct: 227 VVIPTAGTVTETAVSGSELYTSTFPANGTTS 257


>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 147 PSPWKSIVNICLVR--ISLQKMVPASGIRTPVHRKIR 43
           P  WK+++ +   R  ISL  +VP+S     VHR++R
Sbjct: 79  PQYWKNLLELDYPRNLISLGFIVPSSKDGAKVHRELR 115


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 176 RQIIICVITGVKTSCESARVGITPCPFLP*SINAFRFEG*SS 301
           +  I+C+++  KTS  + +   +P P  P S+   + E  SS
Sbjct: 65  QDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSS 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,328
Number of Sequences: 5004
Number of extensions: 61059
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)