Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30393
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family pr...    30   1.9  
At5g63930.1 68418.m08028 leucine-rich repeat transmembrane prote...    29   2.5  
At2g04300.1 68415.m00422 leucine-rich repeat protein kinase, put...    29   3.3  
At1g30530.1 68414.m03735 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.3  

>At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 834

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/65 (23%), Positives = 33/65 (50%)
 Frame = -2

Query: 225 DSQEVLTPVITQIIIWRV*FLLHDVIPSPWKSIVNICLVRISLQKMVPASGIRTPVHRKI 46
           DS+     + T + I  V  +L   +P  +K  V  CLV+++     P+  +  P++ ++
Sbjct: 659 DSESFRQTIDTAVFIELVRKILRSSLPLHYKDWVAACLVKLTALSS-PSQSLNNPINLEV 717

Query: 45  RIHRT 31
            +++T
Sbjct: 718 TLYKT 722


>At5g63930.1 68418.m08028 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1102

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 322 GLSIVTTAALPFKPKRINASR--QKWAGGDTYPCGLTRGLNTSNYAN 188
           GL++     L  K K ++A +  + W   D+ PCG T G+  SNY++
Sbjct: 26  GLNLEGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWT-GVMCSNYSS 71


>At2g04300.1 68415.m00422 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 851

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 544 TYFSK*PPFNNTHSLVP*NGQRYSYRH 624
           T  SK  PFN T SL+P   + YSY H
Sbjct: 258 TPISKNAPFNFTWSLIPSTAKFYSYMH 284


>At1g30530.1 68414.m03735 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 453

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 576 IVERRLFTKVGYSKCLNILFVFPD 505
           +++  +FTK G+ KCLN +FV  D
Sbjct: 391 MMDNGVFTKEGFEKCLNDVFVHDD 414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,613,779
Number of Sequences: 28952
Number of extensions: 312493
Number of successful extensions: 537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)