Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30392
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 73 5e-14
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 31 0.15
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.0
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 1.8
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 27 3.1
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 26 4.2
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 5.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 5.5
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 25 7.3
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 25 7.3
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.6
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.6
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 9.6
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 72.5 bits (170), Expect = 5e-14
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 1/171 (0%)
Frame = +1
Query: 145 MMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQSSN 324
M++FI+Q F +EK ++V++Q I I SN
Sbjct: 15 MVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLKRASMAQKIAKSN 74
Query: 325 MLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSXLLVTLIVQALFQLMEPTVTI 504
+LN++RL++L ++ + ++ K+L + + Y+ + LIVQA+ L EP +
Sbjct: 75 VLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVGIV 134
Query: 505 RVRQTDKALVESLLGKAQTDYKNKIKK-DVVLKVDTENFLSXDTCGGIELV 654
RQ D +V++ + KA K+K D L +T++FL+ GG+ LV
Sbjct: 135 YSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGVVLV 185
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 637 HRCRXTKSS-RCRLSTQHPS*SYSCSLFGLFRAGTPPEPCR 518
H R +SS + RLS +H S++C + G P PCR
Sbjct: 77 HTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 107 LSDAVCSETVSST*WPSSNKRPTKRPNKSMRRPRRSSTSKRAVLSSSNVS 256
L V S +VSST SS+ P+ + P SS+S + SSS+ S
Sbjct: 123 LQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSS 172
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 27.5 bits (58), Expect = 1.8
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Frame = +1
Query: 385 LDEARKRLAEVPKDTK-LYSXLLVTLIVQALFQL---MEPTVTIRVR-----QTDKALVE 537
++EA K KD K L +L T+ + + +E T+TI V DK E
Sbjct: 745 VEEAEKDYQPSEKDDKSLIGGILSTVEMTQSTDVNDEIENTLTIPVEVEHSDNIDKGSEE 804
Query: 538 SLLGKAQTDYKNKIKKDVVLKVDTENFLSXDTC 636
+ LGK D N + DV+ V E + D C
Sbjct: 805 NDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 155 SSNKRPTKRPNKSMRRPRRSSTSKRAVLSSSNVSRLWNT 271
++ K+P P + +P+RS KR VLS + N+
Sbjct: 14 NAQKKPKVSPTPTSPKPKRSLKKKRIVLSDDEDGTIENS 52
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 16 TSFPEPVINFLALYRPFFVLVVLKISSS 99
T+ P+ V NFL+L RP+ VL + +S
Sbjct: 233 TATPDRVDNFLSLLRPYGVLEACRTGTS 260
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 152 PSSNKRPTKRPNKSMRRPRRSSTSKRAVLSSSNVSRLWNTMK 277
PS++ P +S RP+ S T V+SS S L + +K
Sbjct: 323 PSASASLASSPTRSAFRPKTSETVSSEVVSSPPTSPLHSPVK 364
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 570 LVVCLGFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCDQQL*VQFGV 424
L+V EQG ++ D+ +SG HE+ + L N DQQL Q +
Sbjct: 492 LIVACEELEQGFDLDIL---DSLRESGIHEVIQLLRNFPDQQLEKQLNI 537
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 367 DHVRNVLDEARKRLAEVPKD 426
D N L+EA+KRLA +P D
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD 200
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 654 NQLDSTTGVGRQKVLGVDFQHNILLDLILVVCLGF 550
N LDS G R+K H + + ++L++C G+
Sbjct: 26 NVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLCSGY 60
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 106 RHGCCLFLTPLTRKTADIE 50
RHGCC+ L R DI+
Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 9.6
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 110 SDAVCSETVSST*WPSSNKRPTKRPNKSMRRPRRSS-TSKRAVLSSSNVS 256
S S T SST PSS+ + + S P SS TS + +SS+VS
Sbjct: 135 SSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVS 184
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 325 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 432
M +QARL+ L K+R+ + ++ +K LAE+ +D K
Sbjct: 92 MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,099
Number of Sequences: 5004
Number of extensions: 46984
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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