Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30392
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 81 6e-16
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 73 2e-13
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 71 8e-13
09_02_0115 + 4413714-4414475 29 2.5
03_04_0095 + 17266595-17266741,17267235-17267807 29 2.5
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 29 4.3
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520... 28 5.7
06_01_0282 + 2071397-2071843 28 5.7
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 28 5.7
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 5.7
03_04_0159 + 17832666-17832938,17833634-17833873 28 5.7
07_01_1067 + 9437996-9438093,9438368-9438419,9440437-9440511,944... 27 9.9
05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893... 27 9.9
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 81.4 bits (192), Expect = 6e-16
Identities = 49/147 (33%), Positives = 75/147 (51%)
Frame = +1
Query: 136 IKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQ 315
I+ M+ FI Q FNIEK +LV+ ++ KI I+
Sbjct: 10 IQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEVRKKIE 69
Query: 316 SSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSXLLVTLIVQALFQLMEPT 495
S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ L +L EP
Sbjct: 70 YSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPA 129
Query: 496 VTIRVRQTDKALVESLLGKAQTDYKNK 576
V +R R+ D VES+L A+ +Y +K
Sbjct: 130 VLLRCRKEDHHHVESVLHSAKNEYASK 156
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 72.9 bits (171), Expect = 2e-13
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Frame = +1
Query: 136 IKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQ 315
I+ M+ FI Q FNIEK +LV+ ++ +I I+
Sbjct: 10 IQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAKQVDVGRKIE 69
Query: 316 SSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSXLLVTLIV---------- 465
S LN AR+KVL+ ++ V + ++A K L V KD Y +L LIV
Sbjct: 70 YSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQRKDSEIIDQ 129
Query: 466 -QALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIK 582
Q+L +L EP+V +R R+ D+ VES+L A+ +Y K K
Sbjct: 130 IQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAK 169
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 70.9 bits (166), Expect = 8e-13
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 10/157 (6%)
Frame = +1
Query: 136 IKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQ 315
+K M FI Q F IEK +LV+ ++ +I I+
Sbjct: 11 LKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEKQGDIKKKIE 70
Query: 316 SSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSXLLVTLIVQ--------- 468
S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 71 YSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQDKLTKKNPE 130
Query: 469 -ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNK 576
+L +L EP V +R R+ D+ LVES+L A+ +Y +K
Sbjct: 131 QSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADK 167
>09_02_0115 + 4413714-4414475
Length = 253
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 453 HTYCAGSLPAHGTHCHHPRPSNRQGSGG 536
H+ + SLP H HHPRP +GS G
Sbjct: 25 HSSASASLPLLLGHFHHPRPVPPRGSPG 52
>03_04_0095 + 17266595-17266741,17267235-17267807
Length = 239
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Frame = +3
Query: 462 CAGSLPAHGTHCHHPRPSNRQGSGGVPARKSPNRLQE*DQEGCCVE-----SRHRELFVX 626
C G + HG H R ++ GV P + + + C + R RE
Sbjct: 150 CVG-VRLHGRRHPHRREAHGGSGSGVFIGGGPREVAQGETSSCARQHLLDGQRRRE--PK 206
Query: 627 RHLWWNRAG 653
RHLWW R G
Sbjct: 207 RHLWWQRGG 215
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 456 TYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSP 557
T + P H CH RP R G VP SP
Sbjct: 131 TSLLAATPGHRRDCHRARPPPRPGGRLVPVAASP 164
>11_06_0042 +
19550260-19550278,19550418-19550530,19551841-19552051,
19552164-19552401,19552662-19552752,19552883-19552917,
19554179-19554452
Length = 326
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 477 PAHGTHCHHPRPSNRQGSGGVPARKSPNRL 566
P+ C HP + R SGG A S NR+
Sbjct: 289 PSRPAFCMHPADATRTASGGETAAASANRV 318
>06_01_0282 + 2071397-2071843
Length = 148
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = +3
Query: 102 WRSAMQYVQKQYQAH------DGLHRTRGQRKGRINRCEGRGGVQHRKG 230
W +A ++++++Y A DG +G+R+G N GRGG + RKG
Sbjct: 90 WAAAAEWMRRRYAATGSGARWDGGDDRKGRREGNPNPRFGRGG-ERRKG 137
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 560 VWAFPSRDSTRALSV*RTRMVTVGSMSWKRACTISVTSSXEYSLVS 423
++ F ++++TR + RT + G W+ +C I+ T SL S
Sbjct: 393 IFVFLTQEATRCCKLSRTLTLLSGDEQWRSSCIITYTQHIPGSLHS 438
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 456 TYCAGSLPAHGTHCHHPRPSNRQGSGG 536
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
>03_04_0159 + 17832666-17832938,17833634-17833873
Length = 170
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 138 QAHDGLHRTRGQRKGRINRCEGRGGVQHRKGPSCPAATSQDYG 266
+A DG H RG+ + R R GRG + + + PAA D G
Sbjct: 3 EAVDGKHPKRGRGRPRGRRGRGRGRGRGGRSLASPAAGPGDQG 45
>07_01_1067 +
9437996-9438093,9438368-9438419,9440437-9440511,
9441455-9441523,9443711-9444232
Length = 271
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 134 VSST*WPSSNKRPTKRPNKSMRRPRRSSTSKRAVLSSSNVSRLWNT 271
+S+T + +RPT+RP ++ RR RA+ S +V R + +
Sbjct: 141 LSATPAEDAEERPTRRPPQAERRESAKLRINRALNQSGSVGRAFGS 186
>05_06_0131 -
25888434-25888931,25889105-25889155,25889249-25889331,
25889733-25889826,25890188-25890310,25890909-25891154
Length = 364
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 388 QVHYVRDLHELSVPSDELGSACSKIGSSSEVQP 290
Q H + E S P L S+C +I SS+ P
Sbjct: 219 QTHSAKSCEESSEPFSRLASSCHQIQSSNRTHP 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,566,241
Number of Sequences: 37544
Number of extensions: 363335
Number of successful extensions: 1230
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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