Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30392
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           50   2e-06
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    32   0.47 
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)                30   1.9  
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)           28   5.8  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   7.7  

>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 25/61 (40%), Positives = 37/61 (60%)
 Frame = +1

Query: 355 KVREDHVRNVLDEARKRLAEVPKDTKLYSXLLVTLIVQALFQLMEPTVTIRVRQTDKALV 534
           K  E   + +LDEA +RL +V +D   Y  ++  LI Q L+QL+E  V IR R+ D +LV
Sbjct: 68  KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127

Query: 535 E 537
           +
Sbjct: 128 K 128



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 538 SLLGKAQTDYKNKIKKDVVLKVDTENFLSXD 630
           ++ G A  +YK + KK++ L VD +NFL  D
Sbjct: 173 AVFGPATEEYKKQTKKEIELTVDEQNFLGPD 203


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 340 RLKVLKVREDHVRNVLDEARKRLAEV 417
           R+  LK +ED ++N+LDE R +  EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172


>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
          Length = 214

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -3

Query: 385 VHYVRDLHELSVP-----SDELGSACSKIGSSSEVQPASPSFHSIP*S*DVAAGQDGP 227
           ++Y++D H    P     + E G A + + S S    A P F SIP   D +  +DGP
Sbjct: 19  LYYLQDTHHNWYPVYCDFTSEAGKAWTLVLSFSYANHAKPEFFSIPFLDDGSLSEDGP 76


>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
          Length = 514

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +1

Query: 367 DHVRNVLDEARKRLAEVPK-DTKLYSXLLVTLIVQALFQLMEPTVTIRVRQTDKALVESL 543
           D V   L+E   R  E+    T     L   L+    FQL    + + +RQTD  L E L
Sbjct: 164 DLVHAQLEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQL 223

Query: 544 LGKAQTDYK 570
             K Q D K
Sbjct: 224 AKKVQGDVK 232


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 343  LKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSXLLV 453
            LK+LK R  H RN   EA+++  E  ++TK++  + +
Sbjct: 2941 LKILKERRMHARN---EAKRQAIEKERETKIHRKIAI 2974


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +1

Query: 334  QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYS 441
            QA L+  +  +D+++   D  +KRLA++  + ++YS
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYS 2494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,442,538
Number of Sequences: 59808
Number of extensions: 386547
Number of successful extensions: 1254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)