Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30392
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...   130   6e-31
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    28   6.7  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    28   6.7  
Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical pr...    27   8.9  
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    27   8.9  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    27   8.9  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score =  130 bits (315), Expect = 6e-31
 Identities = 72/177 (40%), Positives = 95/177 (53%)
 Frame = +1

Query: 127 RNSIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXX 306
           +  ++HMMAFIEQ                FNIEKGRLVQQQR KIM              
Sbjct: 9   QKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEKQVELQR 68

Query: 307 XIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSXLLVTLIVQALFQLM 486
            IQ+SN LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q L QL+
Sbjct: 69  KIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQGLLQLL 128

Query: 487 EPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLSXDTCGGIELVA 657
           E  V +R R+ D  LVE LL +     + +      + +D +NFL  ++ GG+EL A
Sbjct: 129 EKEVVLRCREKDLRLVEQLLPECLDGLQKEWGSTTKVVLDKQNFLPSESAGGVELSA 185


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 152 PSSNKRPTKRPNKSMRRPRRS--STSKRAVLSSSNVSR 259
           P   +RP+++P K  R PRR    + KR+   S  +SR
Sbjct: 160 PKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSR 197


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 152 PSSNKRPTKRPNKSMRRPRRS--STSKRAVLSSSNVSR 259
           P   +RP+++P K  R PRR    + KR+   S  +SR
Sbjct: 160 PKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSR 197


>Z36948-2|CAA85410.1|  268|Caenorhabditis elegans Hypothetical
           protein D2089.3 protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 155 SSNKRPTKRPNKSMRRPRRSSTSKRAVLSSS 247
           SSN  P+  P+ SM  P++ STS+ A   +S
Sbjct: 119 SSNSLPSDFPDISMNEPQQPSTSENATAVTS 149


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
           protein 4 protein.
          Length = 2104

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 171 QRKGRINRCEGRGGVQHRKGPSCPA 245
           QR GR N+CE  G    R   SC A
Sbjct: 763 QRNGRTNKCEAPGTCDPRMPDSCDA 787


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
           matrix receptor MUP-4 protein.
          Length = 2104

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 171 QRKGRINRCEGRGGVQHRKGPSCPA 245
           QR GR N+CE  G    R   SC A
Sbjct: 763 QRNGRTNKCEAPGTCDPRMPDSCDA 787


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,459
Number of Sequences: 27780
Number of extensions: 280360
Number of successful extensions: 943
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)