Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30392
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    25   0.84 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.84 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.6  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   3.4  

>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = -3

Query: 226 FRC*TPPRPSHRFIRP----FRWPL 164
           FRC  PP P  RFI P    FR PL
Sbjct: 148 FRCIGPPTPFPRFIPPNAYRFRPPL 172


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 7/27 (25%), Positives = 20/27 (74%)
 Frame = +1

Query: 529 LVESLLGKAQTDYKNKIKKDVVLKVDT 609
           +V+++ G     +KN++++++ +K+DT
Sbjct: 58  IVKAISGVQTVRFKNELERNITIKLDT 84


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 72  VSGVKNKQQPWRSAMQYVQKQYQAHDGLH 158
           ++ V+  QQ  + A Q +    Q+H GLH
Sbjct: 786 MAAVQQSQQRHQHAAQMIYGHQQSHHGLH 814


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 576 LILVVCLGFSEQGL 535
           L+LVVCLG + QG+
Sbjct: 5   LLLVVCLGIACQGI 18


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 412 EVPKDTKLYSXLLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV 591
           E+ K  K     ++ +I +A    +EPT    +RQT +  V  +L  A+       KK +
Sbjct: 162 EIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSL 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,961
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)