Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30392
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATP... 91 8e-19
At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putati... 81 8e-16
At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putati... 76 2e-14
At1g20220.1 68414.m02525 expressed protein 31 0.67
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 31 0.89
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t... 30 1.6
At5g55540.1 68418.m06919 expressed protein 28 4.8
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ... 28 6.3
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 28 6.3
At2g41990.1 68415.m05194 expressed protein 28 6.3
At2g02180.1 68415.m00154 tobamovirus multiplication protein 3 (T... 28 6.3
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 27 8.3
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 27 8.3
At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containi... 27 8.3
>At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATPase
E subunit / vacuolar proton pump E subunit (VATE)
identical to SP|Q39258 Vacuolar ATP synthase subunit E
(EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump
E subunit) {Arabidopsis thaliana}
Length = 230
Score = 90.6 bits (215), Expect = 8e-19
Identities = 58/163 (35%), Positives = 82/163 (50%), Gaps = 1/163 (0%)
Frame = +1
Query: 136 IKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQ 315
I+ M+ FI Q FNIEK +LV+ ++ KI I
Sbjct: 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEKQADVRKKID 69
Query: 316 SSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSXLLVTLIVQALFQLMEPT 495
S LN +R+KVL+ ++D V + D+A K L V +D Y LL LIVQ L +L EP+
Sbjct: 70 YSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPS 129
Query: 496 VTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTENFL 621
V +R R+ D LVE++L A+ +Y K K + VDT+ FL
Sbjct: 130 VLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFL 172
>At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 235
Score = 80.6 bits (190), Expect = 8e-16
Identities = 47/149 (31%), Positives = 73/149 (48%)
Frame = +1
Query: 136 IKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQ 315
I+ M+ FI Q FNIE+ +L++ + K+ I
Sbjct: 10 IQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLKQVDIRKRID 69
Query: 316 SSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSXLLVTLIVQALFQLMEPT 495
S LN +R+K L+ ++D V + D A K L V D Y LL +LI+++L +L EP+
Sbjct: 70 YSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPS 129
Query: 496 VTIRVRQTDKALVESLLGKAQTDYKNKIK 582
V +R R+ DK +VES++ A+ Y K K
Sbjct: 130 VLLRCREMDKKVVESVIEDAKRQYAEKAK 158
>At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 237
Score = 75.8 bits (178), Expect = 2e-14
Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 7/169 (4%)
Frame = +1
Query: 136 IKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXXXXXXXXIQ 315
I+ M+ FI Q FNIEK +LV+ ++ KI I
Sbjct: 10 IQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVDVRKKID 69
Query: 316 SSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKL------YSXLLVTLIVQALF 477
S LN +R+KVL+ ++D V + +EA K+L +V + Y LL LIVQ L
Sbjct: 70 YSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLL 129
Query: 478 QLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTENFL 621
+L EP V +R R+ D +VES+L A +Y K K + VD + FL
Sbjct: 130 RLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFL 178
>At1g20220.1 68414.m02525 expressed protein
Length = 315
Score = 31.1 bits (67), Expect = 0.67
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 135 YQAHDGLHRTRGQRKGRINRCEGRGGVQHRKGPS 236
Y+ DG R RG R+GR R GRG GP+
Sbjct: 141 YEGQDGSPRGRGGRRGRGGRGRGRGRGGRGNGPA 174
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 420 KGHQTVLXAAGHTYC-AGSLPAHGTHCHHPRPSNRQGSGGVPARKSPN 560
+GH+ V + +C G+ G+ C +P G+G PAR + N
Sbjct: 1613 RGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKYNGNGSAPARGTNN 1660
>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 917
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 107 LSDAVCSETVSST*WPSSNKRPTKRPNKSMRRPRRSSTSKRAVLSSSNVSR 259
+++A+ + + ST + P PN+S RSS K A+ SSS+V R
Sbjct: 46 INNAMRNSAIGSTKSSPPMRSPLTSPNRSASSSTRSSMMKPALPSSSSVQR 96
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 391 RQVHYVRDL-HELSVPSDELGSACSKIGSSSEVQPASPSFHSI 266
R+ H + +L EL VP+DE A + + ++E++ PSF I
Sbjct: 1084 RRYHDLHNLAQELQVPTDENPEADNHVPVTNELEKVDPSFGGI 1126
>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 874
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 343 LKVLKVREDHVRNVLDEARKRLAEV 417
LK +KV+ED N+LDE ++ L+EV
Sbjct: 54 LKRIKVQEDRGLNLLDEVQQWLSEV 78
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 597 QHNILLDLILVVCLGFSE--QGLHQSLVGLTDADGD 496
QH L D++ V CL F E LH+ G TD D
Sbjct: 558 QHGSLKDVVAVDCLDFCEVKVNLHEFFTGYTDGRYD 593
>At2g41990.1 68415.m05194 expressed protein
Length = 297
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -3
Query: 418 ALQPGACELRQVHYVRDLHELSVPSDELGSACSKIGSSS--EVQPASPSFHS 269
AL P +R ++YV+ V GS CS +GS + SP HS
Sbjct: 16 ALSPPRSAIRPLYYVQSPSNHDVEKMSFGSGCSLMGSPTHPHYYHCSPIHHS 67
>At2g02180.1 68415.m00154 tobamovirus multiplication protein 3
(TOM3) identical to tobamovirus multiplication protein
(TOM3) GI:15425641 from [Arabidopsis thaliana]
Length = 303
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = -1
Query: 423 LWHFSQALASFVKYITYVIFTNFQYLQTSLVQHV 322
++HF + + V+ + +V N Q++Q ++QH+
Sbjct: 85 VFHFLNFVVNGVRAVVFVFRRNVQFMQPEILQHI 118
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 424 PLALQPGACELRQVHYVRDLHELSVPSDELGSAC 323
P L+ G CE+ +V V +LH ++ +L AC
Sbjct: 323 PTMLEKGVCEIEEVVAVHELHIWAITVGKLLLAC 356
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 424 PLALQPGACELRQVHYVRDLHELSVPSDELGSAC 323
P L+ G CE+ +V V +LH ++ +L AC
Sbjct: 362 PTMLEKGVCEIEEVVAVHELHIWAITVGKLLLAC 395
>At1g77010.1 68414.m08968 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 695
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = -3
Query: 400 CELRQVHYVRDLHELSVPSDELG-----SACSKIGS 308
C + + Y +H+L +P+DE+ SAC+ I S
Sbjct: 430 CTVETLEYFHQMHKLDLPTDEVSLSSVISACASISS 465
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,569,455
Number of Sequences: 28952
Number of extensions: 264571
Number of successful extensions: 834
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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