Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30391
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   2e-06
SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)                       36   0.038
SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)                       36   0.038
SB_52091| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)                28   10.0 

>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +1

Query: 685 KKRAPWLILPVVICLSQRLSHACLSASRIKAIPRMA 792
           ++ A WLILPVVICLSQRLSHACLS S      RMA
Sbjct: 126 RRVAIWLILPVVICLSQRLSHACLSISTCTVKLRMA 161


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +1

Query: 685 KKRAPWLILPVVICLSQRLSHACLSASRIKAIPRMA 792
           ++ A WLILPVVICLSQRLSHACLS S      RMA
Sbjct: 102 RRVAIWLILPVVICLSQRLSHACLSISTRTVKLRMA 137


>SB_17017| Best HMM Match : TIL (HMM E-Value=4.8)
          Length = 171

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +1

Query: 685 KKRAPWLILPVVICLSQRLS 744
           ++ A WLILPVVICLSQRLS
Sbjct: 147 RRVAIWLILPVVICLSQRLS 166


>SB_35070| Best HMM Match : TIL (HMM E-Value=8.6)
          Length = 147

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +1

Query: 685 KKRAPWLILPVVICLSQRLS 744
           ++ A WLILPVVICLSQRLS
Sbjct: 123 RRVAIWLILPVVICLSQRLS 142


>SB_52091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1775

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 613 PKHDHAVRAFLRPMRCDVLVFELTKK-RAPWLILPVVICLSQRLSHACLSASRI 771
           PK +   +     M  +V +  + KK R P L + V++ +SQ LSHAC    R+
Sbjct: 46  PKEEEVEQKEEEEMPDEVEMIPMAKKPRKPSLGVAVLLRVSQVLSHACFENHRL 99


>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
          Length = 651

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 167 ATRKTNEHMKNFKISRTKKFMRPITKVSSSPQCIYVKLLTGQDIYERWIDTSD 9
           AT K+N+ ++  +   T +    + + +  PQC     + G+D+  +  DT D
Sbjct: 442 ATSKSNQGVRKAEEKGTHQIDVQVMESTDIPQCHATNAIAGEDVKAKKEDTED 494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,674,351
Number of Sequences: 59808
Number of extensions: 354437
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)