Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30390
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)             231   3e-61
SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)        210   9e-55
SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)                 42   5e-04
SB_39342| Best HMM Match : Glyco_hydro_1 (HMM E-Value=0.17)            32   0.55 
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 29   2.9  
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)               28   6.7  
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   6.7  
SB_3910| Best HMM Match : XylR_N (HMM E-Value=9.8)                     28   6.7  
SB_36562| Best HMM Match : Keratin_B2 (HMM E-Value=8.7)                28   8.9  
SB_12476| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score =  231 bits (566), Expect = 3e-61
 Identities = 109/225 (48%), Positives = 147/225 (65%), Gaps = 2/225 (0%)
 Frame = +3

Query: 48  FPDDFLIGTATASYQIEGAWNEDGKGENIWDYLTHNNPAA-VKDGSTGDIAANSYHNVER 224
           FP DF  G+AT++YQIEGAW+ DGKG  +WDYLTH++  + +    TGD+A +SYH  + 
Sbjct: 36  FPADFEWGSATSAYQIEGAWDVDGKGLGLWDYLTHSHQFSHLFKNQTGDVACDSYHKYKE 95

Query: 225 DVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEMLKYGITPMITLFHW 404
           DV+++R LG+  YRFS+SW RILP G    IN  G++YYN LINE+L Y I P+ T++HW
Sbjct: 96  DVQLLRNLGVKAYRFSISWPRILPKGTKEIINTKGIEYYNNLINELLHYNIQPVATIYHW 155

Query: 405 DLPQKLQELGGFANPLASIWFEDYARVVYTNFGDRVKHWITINEPR-EICYEGYGSVHKA 581
           DLP   +  G + N      F DYA + + NFGDRVK WITINEP  E+ +      H A
Sbjct: 156 DLPVPFRMAGSWTNSSIIEHFNDYAEICFKNFGDRVKKWITINEPAIELLFM---KTHWA 212

Query: 582 PILNATAIGTYLCAKNVLIAHAKAYHLYNNEFKDKQGGQCGITIS 716
           P   A++   YL   N+L+AHAK YH YNN +K  Q G+  I+++
Sbjct: 213 P--PASSREQYLAGHNLLLAHAKVYHTYNNTYKATQKGKISISLN 255


>SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)
          Length = 204

 Score =  210 bits (513), Expect = 9e-55
 Identities = 90/180 (50%), Positives = 126/180 (70%)
 Frame = +3

Query: 45  RFPDDFLIGTATASYQIEGAWNEDGKGENIWDYLTHNNPAAVKDGSTGDIAANSYHNVER 224
           +FP+ F+ G ATA++QIEGAWNEDGKG NIWD  +H     + +    DIA +SYH  + 
Sbjct: 14  QFPESFIWGVATAAHQIEGAWNEDGKGPNIWDAFSHKT-GNIHNNENADIACDSYHKTDE 72

Query: 225 DVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEMLKYGITPMITLFHW 404
           D+++++ LG+  YRFS+SW+RILP G  + +N++GV+YYNR+I+++L   I P+ TL+H+
Sbjct: 73  DIQLLKSLGVSHYRFSISWARILPDGLLDVVNKSGVEYYNRVIDKLLAVNIQPVATLYHF 132

Query: 405 DLPQKLQELGGFANPLASIWFEDYARVVYTNFGDRVKHWITINEPREICYEGYGSVHKAP 584
           DLPQ LQ+ GG+ N     WF  YARV +  FGDRV+ W+TINEP E    GYG  + AP
Sbjct: 133 DLPQALQDKGGWLNSRVIEWFAGYARVCFKLFGDRVRLWLTINEPHEEALNGYGYGNFAP 192


>SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)
          Length = 398

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 22/76 (28%), Positives = 41/76 (53%)
 Frame = +3

Query: 219 ERDVEMMRELGLDVYRFSLSWSRILPSGFANEINEAGVDYYNRLINEMLKYGITPMITLF 398
           E+D+E+M+ LGL+V R    W  + P+    + NE  ++   +++    KYGI  ++ + 
Sbjct: 199 EQDMELMQSLGLNVLRLGYMWPGVEPT--RGKYNETYIEVIKKIVTLSAKYGIYVLLDM- 255

Query: 399 HWDLPQKLQELGGFAN 446
           H D+  +   + GF N
Sbjct: 256 HQDVMSRKFCVEGFPN 271


>SB_39342| Best HMM Match : Glyco_hydro_1 (HMM E-Value=0.17)
          Length = 147

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 630 VLIAHAKAYHLYNNEFKDKQGGQCGITISANSF 728
           +L AHA A+H+Y+ EF+  Q G+  I  ++  +
Sbjct: 1   MLRAHASAWHIYDEEFRGSQHGKLSIVTNSQFY 33


>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 1799

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +3

Query: 516  HWITINEPREICYEGYGSVHKAPI---LNATAIGTYLCAKNVLIAHAKAYHLYNNEFK 680
            H +T ++ + +CY+    +++ PI    N    GTYLC  ++L+  A +  + N  F+
Sbjct: 1743 HIMTFSQLQTVCYKFANLINERPIGRHPNTPDDGTYLCPNDLLLERATS-RIPNRPFR 1799


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 384 MITLFHWDLPQKLQELGGFANPLASIWFEDYARVVYTNF 500
           M   + WD  +KL+ L  +    AS+WF  + R  +  +
Sbjct: 189 MTEFYRWDDERKLRALPLYLTGNASVWFNSHPRAAFNTW 227


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 333  DYYNRLINEMLKYG----ITPMITLFHWDLPQKLQELGGFANPLASIWFEDYARVVYTNF 500
            +Y++ LIN+ ++      +   +   H+ L +K QEL    N + + +   +AR+   N 
Sbjct: 1026 EYFDLLINDCVEVNDVFIVNEELIQVHYKLGEKFQELKPHTNVVVAAFTTSFARLKLYNV 1085

Query: 501  GDRV 512
             DR+
Sbjct: 1086 MDRL 1089


>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
          Length = 488

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 441 ANPLASIWFEDYARVVYTNFGDRVKHWITINEPREICYEGYGSVHKAPILNATAIGTYLC 620
           A P  S  F D+  VV T  G++++ W T  E     +    S ++     A  +G YLC
Sbjct: 222 AKPDGSYNF-DHKSVVNTETGEKIQSWYTEGETWSTKFAELSSSYEE--CRAECVGIYLC 278

Query: 621 A-KNVL 635
             K+VL
Sbjct: 279 LNKDVL 284


>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 823

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 563 VTLVAYFSRLINGDPMFDSVTEIRVDHARVVFKPNGSQWIGEAS 432
           + +  YF+ +  G  +FD  TE  +D  R +F+   S ++ +AS
Sbjct: 592 IRVFEYFTHVDMGKSLFDFATEGDIDSIRQLFEDPESPYVTDAS 635


>SB_3910| Best HMM Match : XylR_N (HMM E-Value=9.8)
          Length = 253

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = -2

Query: 563 VTLVAYFSRL--INGDPMFDSVTEIRVDHARVVFKPNGSQWIGEASQFLQLLRQVPVE*S 390
           +T   YFS          F SV ++ VDH   +F+ NG  WI     F            
Sbjct: 43  ITPTVYFSTTGWFGSHRGFISVQQVGVDHTEGLFQYNGLVWITPRVYF-----STTGWCG 97

Query: 389 NHRGYAVLQHLV 354
           +HRG+  +Q LV
Sbjct: 98  SHRGFISVQRLV 109


>SB_36562| Best HMM Match : Keratin_B2 (HMM E-Value=8.7)
          Length = 186

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 472 TTRAWSTRISVTESNIGSPLMSLEKYATRVTALFIKHLSSTPRLSGHIC 618
           TTRA   R S +++   + + SLE+ +TR   L+      T  L GHIC
Sbjct: 34  TTRAVGKRTSSSQAPCRNQVSSLERASTR--QLYETECCLTCCLKGHIC 80


>SB_12476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 438 FANPLASIWFEDYARVVYTNFGDRVKHWITINEPREICYEGY 563
           F  PL S  F    +  +TNFGD +KH  T+++ REI   G+
Sbjct: 54  FEMPLVSSVFAHLIKG-FTNFGDIIKH--TMSKCREISKTGF 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,961,371
Number of Sequences: 59808
Number of extensions: 421223
Number of successful extensions: 1130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)