Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30388
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)             154   6e-38
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                79   4e-15
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52)                     32   0.44 
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        31   0.58 
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_17434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_1505| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)                 28   5.4  
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          27   9.4  
SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_37063| Best HMM Match : Ribosomal_60s (HMM E-Value=0.43)            27   9.4  
SB_31426| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_22647| Best HMM Match : Ribosomal_60s (HMM E-Value=0.43)            27   9.4  

>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  154 bits (373), Expect = 6e-38
 Identities = 73/108 (67%), Positives = 89/108 (82%), Gaps = 2/108 (1%)
 Frame = +2

Query: 221 RYYSS--LPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETP 394
           R YSS   P+H KV LPALSPTME+G++VSWEK+EGD+L+EGDLL +IETDKATM FETP
Sbjct: 59  RLYSSDGYPTHTKVPLPALSPTMEAGTLVSWEKQEGDELAEGDLLAQIETDKATMEFETP 118

Query: 395 EEGYLAKILIPAGTKGVPVGKLLCIIVGDQNDVAAFKDFKDDSSPATP 538
           EEG++AKILIPAG+K VP+GKLLCIIV ++ DV  FK+F  D +   P
Sbjct: 119 EEGFIAKILIPAGSKDVPIGKLLCIIVPNKEDVDKFKNFTVDDAEGIP 166


>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 382

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 35/52 (67%), Positives = 42/52 (80%)
 Frame = +2

Query: 281 MESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGT 436
           ME+G+IVSW KKEGD +  GD LCEIETDKAT+  +T E+G LAKI+IP GT
Sbjct: 1   METGTIVSWLKKEGDTIEPGDALCEIETDKATLTLDTDEQGVLAKIVIPPGT 52


>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/65 (29%), Positives = 37/65 (56%)
 Frame = +2

Query: 245 HIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILI 424
           ++ VN P  + ++  G I  W++  GD ++E +++ EIETDK ++    P  G + ++ +
Sbjct: 47  YVVVNTPPFAESVTEGDI-RWDQAVGDAVAEDEVVGEIETDKTSIPVTAPANGVIEELFV 105

Query: 425 PAGTK 439
             G K
Sbjct: 106 ADGDK 110


>SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52)
          Length = 353

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 199 TTMDCSDEVLFESTITYKGQPSSSFANHG-EW 291
           TTMDC D  L  ST+ Y G P  S A+HG +W
Sbjct: 214 TTMDCHDFPL--STMAYHGLPYYSMASHGSQW 243



 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 202 TMDCSDEVLFESTITYKGQPSSSFANHG 285
           TMDC D  L  +T+ Y G P  S A+HG
Sbjct: 321 TMDCHDLPL--TTMAYHGLPHYSMASHG 346


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 71  ILSDGLKKAIRSNITRCISTELAKRKVTNKLLEHAQNQT 187
           ++ D L K + S I+ C   E AKR + N+L E  ++ T
Sbjct: 816 VIVDDLSKQLESYISNCAELEEAKRAMDNRLTEKVESLT 854


>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +2

Query: 296 IVSWEKKEG-DKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGTKGVPVGKLLCII 472
           ++++++++G  +  E D   E E       FET  E     + +PA   GV +G+    I
Sbjct: 24  VINFKRRQGLREYEEEDDEEETEQTSVATVFETSLE-----LKVPASVSGVIIGRGGANI 78

Query: 473 VGDQNDVAAFKDFKDDSSP 529
              Q +   + +FKDD  P
Sbjct: 79  KKIQKETGTYINFKDDDEP 97


>SB_17434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 164 LEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKE 319
           LE  Q QT+L  P W+ Q  +Y  L S + V  P L P  +S   + +++++
Sbjct: 110 LESDQAQTILIVPNWSTQ-PWYPKL-SRLLVQKPILLPEKKSNIYLPFDQEK 159


>SB_1505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = +2

Query: 113 TRCISTELAKRKVTNKLLEHAQNQTVLSTPQWTVQMRYYSSLPSHIKVNLPALSPTMESG 292
           T C+ + L  +  T  L   +   +++S+PQ   +   ++    H KV+   LS   +  
Sbjct: 13  TDCVESPLPGKSPTETLFSSSPFLSLMSSPQLKTKQHQFTMNKLHQKVSKLQLSLDAQMH 72

Query: 293 SIVSWEKKEGDKLSEGDL 346
              + E++  DK  E D+
Sbjct: 73  MQATLEEELADKCKEIDV 90


>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
          Length = 2084

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/106 (22%), Positives = 44/106 (41%)
 Frame = +2

Query: 203  QWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMG 382
            +W  +M     L S I V+   +S    S  +VS +       S+     E + +K  + 
Sbjct: 1162 RWVTRMLVSRMLVSPISVSRMLVSRLSVSRMLVSLKNINDRNTSQSSKWLERKDEKG-LR 1220

Query: 383  FETPEEGYLAKILIPAGTKGVPVGKLLCIIVGDQNDVAAFKDFKDD 520
              T +   L  +L+   ++ +  G    ++ G+ NDVA     K+D
Sbjct: 1221 LLTLKCLLLVHLLLKTNSREIKPGLRFLVVCGEANDVADLTRQKED 1266


>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 409 GQNIDSGRYKGSACREIIVHYCWRSE*CCGIQRFQR*LITCNTSKTG*SR*SGCP-HPPP 585
           G   +  + +   C +  +H   R+  C  ++ ++    TC T+K G     G P HPPP
Sbjct: 377 GVQFEGNQCEIDKCAKCDMHATCRNGKCVCMEGYEGDGETC-TAKGGPPG-GGVPSHPPP 434

Query: 586 LQHTPAAPVPSP 621
           L   P + +P P
Sbjct: 435 LPQPPPSIIPPP 446


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 571  PHPPPLQHTPAAPVPSPAP 627
            P PPP+    A P P PAP
Sbjct: 1167 PQPPPVPSVQAPPAPPPAP 1185


>SB_14878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 423 FRPVQRECLSGNYCALLLEIRMMLRHSKISKMTHHLQHLKNR 548
           F PV   C SG  C LL E   M +   I      +QH + R
Sbjct: 143 FHPVIASCFSGPLCELLPEAACMDQEMLIQASGSSIQHQRYR 184


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 257 NLPALSPTMESGSIVSWEKK 316
           N P+LSPT ES  + +W +K
Sbjct: 558 NTPSLSPTSESAMLQNWRQK 577


>SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 287 SGSIVSWEKKEGDKLSEGDLLCEIETDK 370
           +G ++    K GD ++EGD++ +IE  K
Sbjct: 526 TGKVIKVNYKAGDNVAEGDIMVQIEPVK 553


>SB_37063| Best HMM Match : Ribosomal_60s (HMM E-Value=0.43)
          Length = 462

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 522 HHLQHLKNRLVKIKRLPAPAPVAAHPRSPR 611
           HH +  +  L   KR+ +P P A  P+ P+
Sbjct: 278 HHQEPARTPLALAKRITSPEPPATRPKHPK 307


>SB_31426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 305 WEKKEGDKLSEGDLLCEIETDKATMGFETPEE 400
           W  KEGD  SE    C IE D      E P E
Sbjct: 32  WYGKEGDVASEEHEECLIEDDAIIYNHENPHE 63


>SB_22647| Best HMM Match : Ribosomal_60s (HMM E-Value=0.43)
          Length = 462

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 522 HHLQHLKNRLVKIKRLPAPAPVAAHPRSPR 611
           HH +  +  L   KR+ +P P A  P+ P+
Sbjct: 278 HHQEPARTPLALAKRITSPEPPATRPKHPK 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,327,583
Number of Sequences: 59808
Number of extensions: 423057
Number of successful extensions: 1668
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1630
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)