BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30387 (729 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_23849| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9 SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7 SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37) 28 6.7 SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6) 28 8.9 >SB_23849| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 79 Score = 29.1 bits (62), Expect = 3.9 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -1 Query: 390 SNNYQRLF*NLPCCYCSATL 331 +N +Q LF PCCYC A L Sbjct: 18 TNTHQALFYPHPCCYCEACL 37 >SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1506 Score = 28.3 bits (60), Expect = 6.7 Identities = 19/73 (26%), Positives = 33/73 (45%) Frame = -3 Query: 412 LFYFSILF*QLSAPFLKFTLLLL*RHPYLADFNGHFSYTEIVLLISAVHGIVITILYKTP 233 LF ++F P L + Y G+ +YT + L SAV+ ++ I+ P Sbjct: 1387 LFVIVVVFMLCWGPVLIMDFIDTFSGDYTIPREGYTAYTFLASLSSAVNAVIYGIM--NP 1444 Query: 232 EI*AKYLQVYSCK 194 + +YL++ CK Sbjct: 1445 KFKKEYLRIMLCK 1457 >SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37) Length = 420 Score = 28.3 bits (60), Expect = 6.7 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = +2 Query: 485 CPPGFTTAIILGYIDEISLDYVNM*GLVYYTLTNYSS 595 CP + ++L Y+D I +++ N G ++T+Y S Sbjct: 178 CPTLLLSEVVLSYLDPIRINHFNRLGSPLRSITSYPS 214 >SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6) Length = 379 Score = 27.9 bits (59), Expect = 8.9 Identities = 9/30 (30%), Positives = 17/30 (56%) Frame = +1 Query: 163 FITTWSLKTFTCKSTPVNISPKSREFYTGL 252 ++ +W + F C+ TP+ SP +Y+ L Sbjct: 224 YVLSWLERQFDCRITPMVFSPSELSWYSSL 253 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,230,021 Number of Sequences: 59808 Number of extensions: 469314 Number of successful extensions: 920 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 836 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 917 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1949964354 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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