Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30387
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23849| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)                   28   6.7  
SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6)                      28   8.9  

>SB_23849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 390 SNNYQRLF*NLPCCYCSATL 331
           +N +Q LF   PCCYC A L
Sbjct: 18  TNTHQALFYPHPCCYCEACL 37


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = -3

Query: 412  LFYFSILF*QLSAPFLKFTLLLL*RHPYLADFNGHFSYTEIVLLISAVHGIVITILYKTP 233
            LF   ++F     P L    +      Y     G+ +YT +  L SAV+ ++  I+   P
Sbjct: 1387 LFVIVVVFMLCWGPVLIMDFIDTFSGDYTIPREGYTAYTFLASLSSAVNAVIYGIM--NP 1444

Query: 232  EI*AKYLQVYSCK 194
            +   +YL++  CK
Sbjct: 1445 KFKKEYLRIMLCK 1457


>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
          Length = 420

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 485 CPPGFTTAIILGYIDEISLDYVNM*GLVYYTLTNYSS 595
           CP    + ++L Y+D I +++ N  G    ++T+Y S
Sbjct: 178 CPTLLLSEVVLSYLDPIRINHFNRLGSPLRSITSYPS 214


>SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6)
          Length = 379

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 163 FITTWSLKTFTCKSTPVNISPKSREFYTGL 252
           ++ +W  + F C+ TP+  SP    +Y+ L
Sbjct: 224 YVLSWLERQFDCRITPMVFSPSELSWYSSL 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,230,021
Number of Sequences: 59808
Number of extensions: 469314
Number of successful extensions: 920
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)