Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30387
         (729 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77968-1|AAB47248.1|  590|Homo sapiens neuronal PAS1 protein.          30   7.4  
U51628-1|AAC51214.1|  481|Homo sapiens MOP5 protein.                   30   7.4  
BC039016-1|AAH39016.1|  590|Homo sapiens NPAS1 protein protein.        30   7.4  
AB054002-1|BAB21098.1|  590|Homo sapiens neuronal PAS domain pro...    30   7.4  

>U77968-1|AAB47248.1|  590|Homo sapiens neuronal PAS1 protein.
          Length = 590

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 161 HSLPPGH*KRLLARVHL*IFRLNLGSFIQDCNDNTMDGRD 280
           H+LPP     L    H+ +FRL+LG  I  C     D  D
Sbjct: 288 HTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMD 327


>U51628-1|AAC51214.1|  481|Homo sapiens MOP5 protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 161 HSLPPGH*KRLLARVHL*IFRLNLGSFIQDCNDNTMDGRD 280
           H+LPP     L    H+ +FRL+LG  I  C     D  D
Sbjct: 179 HTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMD 218


>BC039016-1|AAH39016.1|  590|Homo sapiens NPAS1 protein protein.
          Length = 590

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 161 HSLPPGH*KRLLARVHL*IFRLNLGSFIQDCNDNTMDGRD 280
           H+LPP     L    H+ +FRL+LG  I  C     D  D
Sbjct: 288 HTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMD 327


>AB054002-1|BAB21098.1|  590|Homo sapiens neuronal PAS domain
           protein 1 (NPAS1) protein.
          Length = 590

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 161 HSLPPGH*KRLLARVHL*IFRLNLGSFIQDCNDNTMDGRD 280
           H+LPP     L    H+ +FRL+LG  I  C     D  D
Sbjct: 288 HTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMD 327


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,185,910
Number of Sequences: 237096
Number of extensions: 2188714
Number of successful extensions: 2954
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2954
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)