Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30383
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p...    31   0.47 
At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    31   0.63 
At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein, A...    28   4.4  
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    28   4.4  
At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc...    28   5.8  

>At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide acetyltransferase
           (E2) subunit of PDC [Arabidopsis thaliana] GI:559395;
           contains Pfam profiles PF00198: 2-oxo acid
           dehydrogenases acyltransferase (catalytic domain),
           PF00364: Biotin-requiring enzyme, PF02817: e3 binding
           domain; supporting cDNA
           gi|5881964|gb|AF066080.1|AF066080
          Length = 637

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +2

Query: 470 LLPIE*FSEVFGPTRGGFTAVG----VVGKLTKLDHLEEVKVVTRVSVGNLRKDH 622
           + P++ F  +  P + G  AVG    VV  +  LD +E+  VVT+++V  L  DH
Sbjct: 557 MYPVDNFCAIINPPQAGILAVGRGNKVVEPVIGLDGIEKPSVVTKMNV-TLSADH 610


>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 385 DNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGIT 257
           D+C   SP+RR   G+  PL  G  +DS      + R   G T
Sbjct: 415 DSCMSSSPSRRVIRGIDDPLLNGSFSDSGVTRTKKHRRKSGYT 457


>At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845 contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 375

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 415 ALTRNSSFMGDNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGI 260
           AL +  SF GDN  PQS   +++   P     G H       + +PR   G+
Sbjct: 141 ALLKMKSFDGDNSNPQSSWSKTYK--PTSSNGGHHFAVVRTTKGKPRRYNGV 190


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = +2

Query: 449  LCT-HRPSLLPIE*FSEVFGPTRGGFTA-VGVVGKLTK--LDHLEEVKVVTRVSVG 604
            +CT H+PS+   E F E+F  TRGG    VG +G  +   +++ E ++ V ++  G
Sbjct: 1014 VCTIHQPSIDIFESFDELFLLTRGGEEIYVGPIGHHSSQLIEYFEGIRGVGKIKEG 1069


>At3g13784.1 68416.m01741 beta-fructosidase, putative /
           beta-fructofuranosidase, putative / cell wall invertase,
           putative similar to beta-fructofuranosidase GI:402740
           from [Arabidopsis thaliana]
          Length = 569

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 254 VCDALRCPGPHARYTEGISMFSL--A*RPGQPAETPSCWGLGFAIIPHKRGI 403
           V D  +    HA  T+ I+  +L  A RP +P++   CW     I+P+ + +
Sbjct: 77  VMDVNKTVWGHATSTDLINWITLSPAIRPSRPSDINGCWSGSVTILPNGKPV 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,867,520
Number of Sequences: 28952
Number of extensions: 288719
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)