BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30381 (708 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 217 2e-57 SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 135 7e-33 SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 122 7e-29 SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 117 1e-27 SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 111 7e-26 SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 95 9e-21 SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 88 1e-18 SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 72 9e-14 SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 50 2e-07 SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 6.1 SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 6.1 SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 8.0 SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 8.0 >SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit Cct2|Schizosaccharomyces pombe|chr 1|||Manual Length = 527 Score = 217 bits (529), Expect = 2e-57 Identities = 117/196 (59%), Positives = 139/196 (70%) Frame = +3 Query: 60 VSLNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 239 +SLNP +I R+SSF+GAIA+GDLVKSTLGPKGMDKIL S +SG + Sbjct: 1 MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58 Query: 240 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 419 VTNDGATILKSI +DN AAK+LV++SKVQD+EVGDGTTSV V ++ K+H Sbjct: 59 VTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIH 118 Query: 420 PQTIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFT 599 PQ II G+RIA+ A AL +S D+ + A R DLENIARTTLSSKILS +K HF Sbjct: 119 PQVIIDGYRIATKTAIDALRASSIDNSS--DPAKFRSDLENIARTTLSSKILSQNKNHFA 176 Query: 600 KLAVDAVLRLKGSGNL 647 +LAVDAVLRLKGS NL Sbjct: 177 QLAVDAVLRLKGSTNL 192 >SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit Cct1|Schizosaccharomyces pombe|chr 2|||Manual Length = 556 Score = 135 bits (326), Expect = 7e-33 Identities = 72/174 (41%), Positives = 112/174 (64%) Frame = +3 Query: 123 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 302 R + + AI ++VKS+LGP G+DK+LV + G V VTNDGATIL + V++PA K+ Sbjct: 23 RNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPAGKV 79 Query: 303 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 482 LV++++ QD+EVGDGTTSV + +L++ K+HP TII G+R+A A + + + Sbjct: 80 LVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTD 139 Query: 483 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLKGSGN 644 +L + S L N+A+T++SSKI+ N + F+ +AVDA+L +K S + Sbjct: 140 VLSCSVDSLGKES----LINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNS 189 >SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit Cct7|Schizosaccharomyces pombe|chr 2|||Manual Length = 558 Score = 122 bits (293), Expect = 7e-29 Identities = 68/186 (36%), Positives = 104/186 (55%) Frame = +3 Query: 72 PIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTND 251 P+ +LK +S+ +A+ D +++TLGP G DK++V + G+V ++ND Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65 Query: 252 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 431 GATI+K + + +PAAK LVD+++ QD EVGDGTTSV V +E + I Sbjct: 66 GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125 Query: 432 IAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAV 611 I G+R A+ A + E + H +E LR L A T ++SK++ ++ FTK+ V Sbjct: 126 IRGYRKAAQLAVNKIKEIAI-HLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVV 184 Query: 612 DAVLRL 629 DAVL L Sbjct: 185 DAVLTL 190 >SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit Cct4|Schizosaccharomyces pombe|chr 2|||Manual Length = 527 Score = 117 bits (282), Expect = 1e-27 Identities = 66/169 (39%), Positives = 104/169 (61%) Frame = +3 Query: 123 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 302 R+S+ + A ++ D ++++LGPKGMDK ++ G+ G+V +TNDGATILK + V +PAAK+ Sbjct: 21 RLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGATILKHLSVLHPAAKM 77 Query: 303 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 482 LVD+S QD E GDGTTSV + KL+++ +HP I ++ A+ + E Sbjct: 78 LVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKE 137 Query: 483 ASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRL 629 + + + E+ LR A T+L+SKI+S + +AVDAVL++ Sbjct: 138 NALAIELSDRESLLRA-----ATTSLNSKIVSQYSNLLAPIAVDAVLKV 181 >SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit Cct5|Schizosaccharomyces pombe|chr 1|||Manual Length = 546 Score = 111 bits (268), Expect = 7e-26 Identities = 65/165 (39%), Positives = 98/165 (59%) Frame = +3 Query: 129 SSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILV 308 S + + ++V+++LGP+G+DKIL+S G++ VTNDGATIL + V++ AK+LV Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILIS---PDGEITVTNDGATILDQMEVEHQIAKLLV 94 Query: 309 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEAS 488 +SK QD+E+GDGTT V V LI++ +HP I G+ A A + L +A Sbjct: 95 QLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHL-DAI 153 Query: 489 FDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL 623 D E + +L A+T+L SK++S +HF +AVDAVL Sbjct: 154 SDVVDFSPENT--TNLFRSAKTSLGSKVVSKAHDHFANIAVDAVL 196 >SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit Cct3|Schizosaccharomyces pombe|chr 2|||Manual Length = 528 Score = 95.1 bits (226), Expect = 9e-21 Identities = 55/192 (28%), Positives = 104/192 (54%) Frame = +3 Query: 69 NPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTN 248 +P+ ++ +MS+ A A+ D++++ LGP+ M K+L+ G V +TN Sbjct: 3 SPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTN 59 Query: 249 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQT 428 DG IL+ I V +PAAK ++++++ QDEEVGDGTTSV + L+++K+HP Sbjct: 60 DGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVV 119 Query: 429 IIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILSNHKEHFTKLA 608 +I ++ A + A + E + N+++ ++ + RT + +K+++ + LA Sbjct: 120 MIRSFKQALEDALSIIDEITL--PVNVDD---NAEMFRLIRTCIGTKLVARWSDLMCHLA 174 Query: 609 VDAVLRLKGSGN 644 + AV + + N Sbjct: 175 LRAVRTVASTSN 186 >SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit Cct6|Schizosaccharomyces pombe|chr 2|||Manual Length = 535 Score = 88.2 bits (209), Expect = 1e-18 Identities = 54/163 (33%), Positives = 82/163 (50%) Frame = +3 Query: 144 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 323 AI + D++KS LGP G K+LV +G +++T DG +L + + NP A + + Sbjct: 25 AIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATA 81 Query: 324 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQK 503 QD+ GDGTTSV + I + LHP I G+ +A + A L D + Sbjct: 82 QDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEV 141 Query: 504 NLNEASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVLRLK 632 + R L N+A+T+LS+KI S E VDA+L ++ Sbjct: 142 D------REVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIR 178 >SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit Cct8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 546 Score = 71.7 bits (168), Expect = 9e-14 Identities = 46/157 (29%), Positives = 78/157 (49%) Frame = +3 Query: 153 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDE 332 + ++ +++LGP G +KI+V+ + Q +TND ATI++ + V +PAAK++VD ++ Q+ Sbjct: 38 LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQEN 94 Query: 333 EVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNLN 512 E+GD V V +I L P I G+ +A + L E D + Sbjct: 95 ELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICAD---KIE 151 Query: 513 EASLRVDLENIARTTLSSKILSNHKEHFTKLAVDAVL 623 +L RT +SSK N ++ + L A+L Sbjct: 152 TVESEKELIKAIRTCISSKQYGN-EDFLSDLVAKAIL 187 >SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60|Schizosaccharomyces pombe|chr 1|||Manual Length = 582 Score = 50.4 bits (115), Expect = 2e-07 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 4/116 (3%) Frame = +3 Query: 123 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DNP 290 R S G + V TLGPKG + ++ + G ++T DG T+ +S+ + +N Sbjct: 44 RASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVTVARSVSLKDKFENL 100 Query: 291 AAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 458 A+++ D++ +E GDGTT+ TV + + +P + G ++A D Sbjct: 101 GARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVD 156 >SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1053 Score = 25.8 bits (54), Expect = 6.1 Identities = 9/31 (29%), Positives = 17/31 (54%) Frame = +2 Query: 545 RTDHTELKDPFKSQRAFHKISS*CSFAFERI 637 + D +L +P+++ FH S C F F+ + Sbjct: 105 KVDVAQLVEPYRNDCIFHDASGACHFFFKEV 135 >SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharomyces pombe|chr 2|||Manual Length = 892 Score = 25.8 bits (54), Expect = 6.1 Identities = 22/66 (33%), Positives = 31/66 (46%) Frame = +3 Query: 147 IAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQ 326 IA+ D+ S LG G+ RN G + DG T LKS+GV + K+ VQ Sbjct: 324 IAVPDV--SQLGIPGVKPEAYRDSRNFGGRDA--DGVTGLKSLGVRDLTYKLSFLACMVQ 379 Query: 327 DEEVGD 344 ++ D Sbjct: 380 PDDAND 385 >SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1405 Score = 25.4 bits (53), Expect = 8.0 Identities = 10/41 (24%), Positives = 20/41 (48%) Frame = +3 Query: 153 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSI 275 +G++ LGP I+ +CG ++ V+ A + + I Sbjct: 757 VGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQI 797 >SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces pombe|chr 1|||Manual Length = 536 Score = 25.4 bits (53), Expect = 8.0 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 277 PIDFNIVAPSFVTST*PEFLPQETKILSIP 188 P+D ++ +P TST PE LP+E S+P Sbjct: 408 PLDGDVESPH-PTSTMPEALPREPLSFSLP 436 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,589,565 Number of Sequences: 5004 Number of extensions: 47346 Number of successful extensions: 128 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 116 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 329179816 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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