Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30378
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    29   0.49 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    29   0.64 
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    28   1.1  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   2.0  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   4.5  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   6.0  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   7.9  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.9  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.9  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   7.9  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   7.9  

>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = +3

Query: 438 NDLLQQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQP 617
           N+++Q      +Q  +FS  + +KVD          V   VD +   A L +  FV  +P
Sbjct: 427 NEIIQACPKS-RQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRP 485

Query: 618 TEELLREFETVYGC 659
             ELLR    +Y C
Sbjct: 486 QRELLRPAMLIYLC 499


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 513 DLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGCCRVNAFN 680
           D  S   ++  VP R+DP P +  L+S+P     P E  +   E  + CC   ++N
Sbjct: 372 DTTSDNNSLQAVP-RLDPVP-SLTLSSTPVAELPPLELRIHLAEVFFHCCHGQSYN 425


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 255 AIDLLTNDECRLLLEVEDFFN 317
           +I+ +TND+ R++ E+E F+N
Sbjct: 358 SINFVTNDDVRMMREIEQFYN 378


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 388 STRHHRRS*NQVPPNSLTIFCSS*TVNANK 477
           STR   +  N+VP N L I+C    +  NK
Sbjct: 74  STRERLKLYNKVPDNGLVIYCGEVIMEGNK 103


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +2

Query: 17  FSCNFAITMGF*YLIVCTPACAFTHN-IKMLAKMAPS-QDKLVHLHKTPTSLDINPSGLL 190
           F C   I++ F   I    A A  H  I  L  + P  +D   H  K      I+P  LL
Sbjct: 310 FVCPSCISLDFDLQI---QAFARQHRVISTLGVVYPEREDSCFHKIKAAQWHQISPRSLL 366

Query: 191 FAFVELNHYNNECESEGVMGCGHRF 265
           F F E NH +++     ++  G ++
Sbjct: 367 FQFQEQNHIHHKKIRRKLLAAGWKW 391


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 498 LEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPT-EELLREFETV 650
           +E + D+ S   N S +P+      P  V+ SSP   + P+  +++ + +T+
Sbjct: 470 IEPEPDVISTVRNSSTIPQASSSSVPKIVVDSSPVTENPPSHSDVMGQKDTI 521


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 456 LDSQCKQENIFSNWLEEKVD-LPSIFENISEVPERVDPQP 572
           +D  CKQ+ +FS   E++ D L SI   +S +  ++   P
Sbjct: 242 IDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSP 281


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 273 NDECRLLLEVEDFFNDDC 326
           NDECR L +   FF+ +C
Sbjct: 535 NDECRRLKQCNHFFHREC 552


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 128 DKLVHLHKTPTSLDINPSGLLFAFVELNH 214
           D + H  K  +S   NPS LLF    L H
Sbjct: 59  DGIPHSRKKVSSAHFNPSTLLFLLKRLGH 87


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 398  WRVETRSVIDFDLRCSARKVFKQITIIIEEILNFEQQTALIVSEQIDGR 252
            W   T+ V     R S RKV + + +  EE    +++ ALI  + +  R
Sbjct: 2143 WSTPTKLVEPSQFRASPRKVDQAVVLSSEEKEILQKKYALIAEDNLIAR 2191


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +2

Query: 104 LAKMAPSQDKLVHLH----KTPTSLDINPSGLLFAFVELNHYNNECESE 238
           L +    ++KLV+L      T T LD +   ++ A V+ N Y N C+++
Sbjct: 170 LEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNK 218


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 607 PRSPLKNCCGNSKRFMGAVELTHLTPPQSP 696
           PRSPL    GN++       ++  TPP SP
Sbjct: 112 PRSPLTPLKGNTRASPEIRYVSDFTPPSSP 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,514
Number of Sequences: 5004
Number of extensions: 53997
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)