Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30377
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0063 - 16968412-16968599,16970820-16970994                       28   7.0  
08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11...    28   9.3  

>03_04_0063 - 16968412-16968599,16970820-16970994
          Length = 120

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 194 LLGVRSILTIENGFSLSYEQENLIASRQEEAC**SDPY 81
           LL VR I  + NGF  SY Q+ +I  ++++    SD Y
Sbjct: 16  LLHVRLIRKLINGFDQSYNQDTVIYDKEKQIFAWSDLY 53


>08_01_0016 -
           109152-109214,109296-109385,109853-109954,110046-110213,
           110510-110530,110836-110896,110987-111099,112125-112202,
           112294-112434,112532-112696,112776-112868,113096-113162,
           113285-113388,113896-114041,114303-114579
          Length = 562

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -1

Query: 243 SLPKLTRMVI**AVPYPIGSAVHSDH*ERILLILR----TGKPDCFTPRGGLLMI 91
           SL +L ++++   VPYP+  A   DH + +L  +R    +G+P   T  G  L++
Sbjct: 127 SLAELEQLLLHQQVPYPVYFAFQDDHFDNLLADIRKIASSGQPASATTGGYKLVV 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,512,208
Number of Sequences: 37544
Number of extensions: 420213
Number of successful extensions: 782
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)