Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30377
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical protein
            K02E2.2 protein.
          Length = 1021

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 193  RVGNCLLYHHSCEFRQ*KNSGNSKTVTADL 282
            ++G CLL H+  +FR  K    SKTV+  +
Sbjct: 916  KIGECLLIHNGDQFRMQKIDSISKTVSTGI 945


>U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical
           protein F14D12.1a protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 680 FRTHISTHIFFTGGSTSCESVQVPPP 757
           +RTH S H F    S+S E  ++PPP
Sbjct: 359 YRTHESKHSFALSTSSSSEVDELPPP 384


>U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical
           protein F14D12.1b protein.
          Length = 713

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 680 FRTHISTHIFFTGGSTSCESVQVPPP 757
           +RTH S H F    S+S E  ++PPP
Sbjct: 359 YRTHESKHSFALSTSSSSEVDELPPP 384


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,505,738
Number of Sequences: 27780
Number of extensions: 365028
Number of successful extensions: 592
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)