Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30377
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote...    29   4.4  
At1g77210.1 68414.m08993 sugar transporter, putative similar to ...    28   7.7  
At1g61380.1 68414.m06917 S-locus protein kinase, putative simila...    28   7.7  

>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 751

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -2

Query: 662 PPLPQPSKPNALLLC----GPTRHPITSKNIHQKAW 567
           PP P P+ P AL       G T HPI+SK   +  W
Sbjct: 296 PPSPTPNSPPALAAIPNTIGLTNHPISSKTGPKSKW 331


>At1g77210.1 68414.m08993 sugar transporter, putative similar to
           monosaccharide transporter PaMst-1 [Picea abies]
           GI:2258137, sugar carrier protein GI:169735 from
           [Ricinus communis], glucose transporter [Saccharum
           hybrid cultivar H65-7052] GI:347855; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 504

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 595 VIGCLVGPQSSNAFGFEGWGSGGTTKME 678
           +  C+VG    + FG++   SGG T M+
Sbjct: 27  IFACIVGSMGGSLFGYDLGVSGGVTSMD 54


>At1g61380.1 68414.m06917 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 805

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 226 TNGDIIGSSLPYWECGPF 173
           T G I   S+PYW CGP+
Sbjct: 190 TQGLIRRGSVPYWRCGPW 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,416,524
Number of Sequences: 28952
Number of extensions: 334145
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)