Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30374
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 243 2e-65
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 102 5e-23
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 58 1e-09
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 44 2e-05
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 43 4e-05
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 36 0.006
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 29 0.73
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 29 0.97
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 28 1.7
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 2.2
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 27 3.9
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 26 6.8
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 26 6.8
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 9.0
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 243 bits (595), Expect = 2e-65
Identities = 118/201 (58%), Positives = 149/201 (74%), Gaps = 1/201 (0%)
Frame = +3
Query: 168 ALVNVPPTKLTVLDNGLRIATEDSG-AATATVGLWIDAGSRYETSKNNGVAHFLEHMAFK 344
A +P T+ T L NGL +ATE A TATV + +DAGSR ET+KNNG AHFLEH+AFK
Sbjct: 15 ATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFK 74
Query: 345 GTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEP 524
GT RSQ LEL EN GAHLNAYTSREQTV+YA N VP AV +LADI+ NSS++
Sbjct: 75 GTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISAS 134
Query: 525 EIERERGVILREMQDVESNLQEVVFDHLHATAFQGTPLGQTILGPTKNIKKISKADLQSY 704
+ERER VILRE ++V+ EVVFDHLHATA+QG PLG+TILGP +NI+ +++ DL Y
Sbjct: 135 AVERERQVILREQEEVDKMADEVVFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQY 194
Query: 705 IRNHYQPGRIVLSGAGGVKHE 767
I+++Y+ R+++S AG + HE
Sbjct: 195 IKDNYRSDRMIISSAGSISHE 215
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 102 bits (245), Expect = 5e-23
Identities = 50/183 (27%), Positives = 97/183 (53%)
Frame = +3
Query: 204 LDNGLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELL 383
L NG+ + + +G+++ AGSRYET K +GV+HF++ +AF+ T + +++
Sbjct: 51 LKNGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAK 110
Query: 384 VENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVILREM 563
+EN+G + TSRE ++ A +DV ++LA+ + + E ++ R I+ E
Sbjct: 111 LENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYEN 170
Query: 564 QDVESNLQEVVFDHLHATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLS 743
++ + ++ + H TAFQ LG +L + I+ ++ Y++ Y+P + L+
Sbjct: 171 SELWTKPDALLGEFAHVTAFQNNTLGNCLLCTPDKVNGITATSIREYLKYFYRPEHLTLA 230
Query: 744 GAG 752
AG
Sbjct: 231 YAG 233
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 58.4 bits (135), Expect = 1e-09
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 4/173 (2%)
Frame = +3
Query: 213 GLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVEN 392
G+ A ++ AT ++ + I+AGSRY+ GV+H LE AFK T +RS + E
Sbjct: 30 GVSFAGRETPTATGSLSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESEL 87
Query: 393 MGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVILR-EMQD 569
+G L+ +RE + A+ L + +LA+++ + ++ E R E +
Sbjct: 88 LGGQLSTQITREHIILTARFLNEYLEYYARLLAEVVDATKFLPFQLTEEVLPTARIESEL 147
Query: 570 VESNLQEVVFDHLHATAFQGTPLGQTILGP---TKNIKKISKADLQSYIRNHY 719
++ V LH AF +G + P + +I +I ++Y+++++
Sbjct: 148 FREDILRVAMAKLHEKAFH-RGIGNEVYLPASASPSISEIKDFASKAYVKSNF 199
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 44.0 bits (99), Expect = 2e-05
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 13/167 (7%)
Frame = +3
Query: 291 ETSKNNGVAHFLEHMAFKGTSKRSQTD-LELLVENMGAHLNAYTSREQTVFYAKCLAND- 464
E N G H LEH+ F G+ K L +NA T + T + D
Sbjct: 52 EAHDNLGCPHTLEHLCFMGSKKYPMNGILTKFAGRACGDINACTDVDYTSYELSAAEEDG 111
Query: 465 ----VPV-AVEILADIIQNSSLAEPEIE-----RERGVILREMQDVESNLQEVVFDHLHA 614
+PV A IL+ I+ + + E GV+ EMQ+ +S+ +V+FD +
Sbjct: 112 FLRLLPVFADHILSPILSDEAFCTEVYHINGMGEESGVVYSEMQNTQSSETDVMFDCMRT 171
Query: 615 TAFQGTP-LGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAG 752
+ + T G ++K+S ++ Y + Y P I L G
Sbjct: 172 SQYPVTSGYYYETGGHPSELRKLSIEKIREYHKEMYVPSNICLIVTG 218
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 43.2 bits (97), Expect = 4e-05
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Frame = +3
Query: 192 KLTVLDNGLRIA-TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSK-RSQ 365
+L L+N L + D A+ + + GS+ + G+AHF EH+ F GT K +
Sbjct: 25 RLIKLENDLEVLLVRDPETDNASAAIDVHIGSQSNPRELLGLAHFCEHLLFMGTKKYPDE 84
Query: 366 TDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERE-R 542
+ +E+ NAYT+ T +Y + + + A++ A + E +RE R
Sbjct: 85 NEYRKYLESHNGISNAYTASNNTNYYFEVSHDALYGALDRFAQFFIDPLFLEECKDREIR 144
Query: 543 GVILREMQDVESN 581
V ++++S+
Sbjct: 145 AVDSEHCKNLQSD 157
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 35.9 bits (79), Expect = 0.006
Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 21/179 (11%)
Frame = +3
Query: 279 GSRYETSKNNGVAHFLEHMAFKGTSKRSQTD--LELLVENMGAHLNAYTSREQTVF-YAK 449
G + + G+ H LEH G++K D ++L ++ +NA+T+ + T + +A
Sbjct: 78 GFQTPAENDEGIPHILEHTTLCGSNKYPVRDPFFKMLNRSLATFMNAFTASDFTFYPFAT 137
Query: 450 CLANDVPVAVEILADIIQNSSLAEPEIERE------------------RGVILREMQDVE 575
D ++ D L + + +E GV+ EM+
Sbjct: 138 VNTTDYKNLRDVYLDATLFPKLRKLDFLQEGWRFEHADVNDKKSPIIFNGVVYNEMKGQV 197
Query: 576 SNLQEVVFDHLHATAFQGTPLGQTILGPTKNIKKISKADLQSYIRNHYQPGRIVLSGAG 752
S+ + + FQGT G G I + +L + R+HY P + G
Sbjct: 198 SDSSYIFYMLFQQHLFQGTAYGFNSGGDPLAIPDLKYEELVKFHRSHYHPSNAKILSYG 256
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 29.1 bits (62), Expect = 0.73
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 662 GRSKNCLSQWGTLECCCVKVIKHNLLKVTFDILHFAKNDTAFSF 531
GRS C +WG L+ C + N LKVT + F N+ +F
Sbjct: 2146 GRSFACKKRWGFLQMPCT---RENFLKVTLQV--FKSNEDTCNF 2184
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 28.7 bits (61), Expect = 0.97
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 372 SPSVIFYWYL*KPCVQGNERHHCSWRFHS 286
+PS W L ++ RHHC W++++
Sbjct: 329 NPSSPIQWSLISKNMRNRHRHHCRWKYYT 357
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 551 NDTAFSFDFGFGEGGILYDISKDLYCYG 468
N F +F G+ G+ YDI + L YG
Sbjct: 641 NRNIFHIEFDLGDSGLTYDIGEALGVYG 668
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 315 AHFLEHMAFKGTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAV-EILA 491
A+F + +G+ S T L V N + ++ RE+ VF + PV++ + +
Sbjct: 430 AYFSKSRYVEGSGSMSTTPLATSVNNSYKLPSGFSVREEAVFSSPTTEGSRPVSLARLKS 489
Query: 492 DIIQNSSLAEPE 527
+ I S A PE
Sbjct: 490 EPIFRSDTASPE 501
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 607 FTQQHSKVPHWDKQFLDL-PKILRKSLRLT 693
+ ++H K PHWD +D+ + +++ LRLT
Sbjct: 306 YYEKHLKQPHWDGSDIDMGVQRMQEMLRLT 335
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 6.8
Identities = 23/107 (21%), Positives = 43/107 (40%)
Frame = +3
Query: 228 TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVENMGAHL 407
T+ SG +GLW+ Y+ SK + + F+ + LEL + M
Sbjct: 280 TQGSGIFLTAIGLWL-----YDRSKKGNLYESCKVKEFEKDA------LELEEQTMEDEK 328
Query: 408 NAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGV 548
+ +S Q+ FY K + ++ + +I +S + + GV
Sbjct: 329 SYPSSGTQSPFYGKNFLPQITPRLDSVVPLISDSPMTPNSVYSNEGV 375
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 394 WVHT*TPTPPGNKQFFTQNASLMTFP 471
W H TPT P + Q T N+SL P
Sbjct: 361 WNHCATPTIPVSLQVLTPNSSLKVDP 386
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 329 FKEMSDTIVLGGFIAGASVDPESYSGSGGSRIFSSN 222
F+ + + + G +I +D ++ + GGSR+F N
Sbjct: 328 FEHIYEANIFGLYIQSPQLDIQTVAAGGGSRLFWRN 363
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 280 PASIQSPTVAVAAPESSVAIRKPLSSTVS 194
P+S++ P P S ++ + P S+TVS
Sbjct: 189 PSSLEKPAGTGDLPSSEISTKAPASTTVS 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,334,303
Number of Sequences: 5004
Number of extensions: 72846
Number of successful extensions: 201
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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