Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30372
         (341 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    29   0.81 
At1g73090.1 68414.m08451 expressed protein                             27   3.3  
At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit (...    27   4.3  
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa...    26   5.7  
At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquino...    26   7.6  
At3g55740.2 68416.m06193 proline transporter 2 (ProT2) identical...    25   10.0 
At3g55740.1 68416.m06192 proline transporter 2 (ProT2) identical...    25   10.0 
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ...    25   10.0 

>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 101 GIPPLEWFLTKFVTTFLPNLF 39
           GIP L  FLTK +T  LP LF
Sbjct: 344 GIPVLSMFLTKLLTVDLPRLF 364


>At1g73090.1 68414.m08451 expressed protein
          Length = 306

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 150 VFHPICGLWTISTLSHHPSPAFEEVIQAAEIL 245
           ++  +CG   +STL++  SP + EV +A E++
Sbjct: 194 IYGRVCGGPVVSTLANAFSPLYFEVTEAMEVM 225


>At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit
           (Ath-B) nearly identical to gi:2827143, cellulose
           synthase, catalytic subunit (Ath-B)
          Length = 1065

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 83  WFLTKFVTTFLPNLFEMRVNGV 18
           WFL+ F++ F   + EMR +GV
Sbjct: 879 WFLSLFLSIFATGILEMRWSGV 900


>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 425

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 29  LASQTNWAEMW*RIS*ETILTAVFLARIY 115
           LA+Q  WA+M+ R+S  T+ +A  LA  Y
Sbjct: 313 LATQRRWAQMYGRVSSFTLSSAERLADTY 341


>At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquinone
           oxidoreductase family protein contains Pfam profile:
           PF05187 Electron transfer flavoprotein-ubiquinone 
           oxidoreductase
          Length = 633

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 83  WFLTKFVTTFLPNLFEMRVNGVISL 9
           WFLTK     LP+ F+ + N VISL
Sbjct: 179 WFLTKDRAFSLPSPFDNKGNYVISL 203


>At3g55740.2 68416.m06193 proline transporter 2 (ProT2) identical to
           proline transporter 2 GI:1769903 from [Arabidopsis
           thaliana]
          Length = 383

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 130 NRYKLTLYFILYAGSGLSAPYLITRHQLLKK 222
           N + +   FI+ AGS L A Y++ R   L K
Sbjct: 64  NLFMINCGFIILAGSALKAVYVLFRDDSLMK 94


>At3g55740.1 68416.m06192 proline transporter 2 (ProT2) identical to
           proline transporter 2 GI:1769903 from [Arabidopsis
           thaliana]
          Length = 439

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 130 NRYKLTLYFILYAGSGLSAPYLITRHQLLKK 222
           N + +   FI+ AGS L A Y++ R   L K
Sbjct: 120 NLFMINCGFIILAGSALKAVYVLFRDDSLMK 150


>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 85  NGFSRNSLPHFCPICLRCESMG*SL 11
           NG  + S  H CPIC R    G +L
Sbjct: 390 NGAKKKSKGHECPICFRVFKSGQAL 414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,814,363
Number of Sequences: 28952
Number of extensions: 128847
Number of successful extensions: 308
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)