Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30370
         (713 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.3  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   5.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.7  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = +2

Query: 266 ASGALAAGTIASPWSTPAGAPDTNGSGGADAKHLDVGDASDDEKDMSAADAEGVWSPD 439
           +SG  +      P +T +G+P +  S  +   H+    A+ D + +     +  +SPD
Sbjct: 24  SSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAYDCEGVIRHHGQWNYSPD 81


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +2

Query: 326 PDTNGSGGADAKHLDVGDASDDEKDMSAADAEGVWSPDI 442
           PD NG GGA   + D   A +      A    G+   DI
Sbjct: 369 PDENGEGGAWVGYEDPDTAGNKASYARAKGLGGIAIVDI 407


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -3

Query: 603  CDETCFL---VRVL--PVLSLIYLAINSFLPYILPSSERIIL 493
            C   CF    +R+    +L+ +YL +  F  Y   S ERI L
Sbjct: 1111 CSNRCFFPSKIRICWNVLLNCVYLFLCGFCVYEFASDERIKL 1152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,538
Number of Sequences: 336
Number of extensions: 3173
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)