Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30370
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30397| Best HMM Match : TEA (HMM E-Value=1.2e-08) 138 5e-33
SB_8161| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 5e-31
SB_929| Best HMM Match : LEA_3 (HMM E-Value=7.8) 87 1e-17
SB_39315| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 3e-17
SB_22164| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_30727| Best HMM Match : DUF658 (HMM E-Value=0.39) 27 1.2
SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_48434| Best HMM Match : Phycoerythr_ab (HMM E-Value=3.1) 29 3.7
SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13) 29 3.7
SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27) 29 4.9
SB_15433| Best HMM Match : Arm (HMM E-Value=9.7) 29 4.9
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 28 6.5
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 28 8.6
SB_53011| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_25852| Best HMM Match : Herpes_capsid (HMM E-Value=7) 28 8.6
>SB_30397| Best HMM Match : TEA (HMM E-Value=1.2e-08)
Length = 281
Score = 138 bits (333), Expect = 5e-33
Identities = 62/82 (75%), Positives = 76/82 (92%)
Frame = +2
Query: 410 ADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRK 589
A+ EG+W+ DIEQSFQEALAIYPPCGR+KI+LS + KMYGRNELIARYI ++TGK RTRK
Sbjct: 2 AEGEGLWAGDIEQSFQEALAIYPPCGRQKIMLSTKDKMYGRNELIARYILMKTGKMRTRK 61
Query: 590 QVSSHIQVLARRKLREIQAKLK 655
QV+SHIQVLAR+K+R+IQ+K+K
Sbjct: 62 QVASHIQVLARKKIRQIQSKIK 83
>SB_8161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 131 bits (317), Expect = 5e-31
Identities = 65/73 (89%), Positives = 65/73 (89%), Gaps = 4/73 (5%)
Frame = +2
Query: 386 DDEKDMS----AADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARY 553
DD K S A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARY
Sbjct: 52 DDSKAKSPTDMANDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARY 111
Query: 554 IKLRTGKTRTRKQ 592
IKLRTGKTRTRKQ
Sbjct: 112 IKLRTGKTRTRKQ 124
>SB_929| Best HMM Match : LEA_3 (HMM E-Value=7.8)
Length = 165
Score = 87.4 bits (207), Expect = 1e-17
Identities = 43/51 (84%), Positives = 43/51 (84%), Gaps = 4/51 (7%)
Frame = +2
Query: 386 DDEKDMS----AADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMY 526
DD K S A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMY
Sbjct: 70 DDSKAKSPTDMANDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMY 120
>SB_39315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 85.8 bits (203), Expect = 3e-17
Identities = 43/65 (66%), Positives = 52/65 (80%)
Frame = +2
Query: 461 ALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREI 640
AL + P G R I D KMYGRNELIARYI ++TGK RTRKQV+SHIQVLAR+K+R+I
Sbjct: 12 ALELVDPPGCRNSITKD--KMYGRNELIARYILMKTGKMRTRKQVASHIQVLARKKIRQI 69
Query: 641 QAKLK 655
Q+K+K
Sbjct: 70 QSKIK 74
>SB_22164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 33.1 bits (72), Expect = 0.23
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Frame = +2
Query: 290 TIASPWSTPAGAPDTNGSGGADAKHLDVGDASDDEKDMSAADA-EGVWSPDIEQSFQEAL 466
++ SP T +P NGSG + +AS + + D V S +++
Sbjct: 16 SVRSPTGT--ASPSENGSGSPEGSRSP--EASSPPPSVQSPDGGSSVASQPVKKE----- 66
Query: 467 AIYPPCGRRK-IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 628
A PP R K +IL EGK+ +L R +++ KQV+ + +LAR K
Sbjct: 67 AGPPPKRRGKALILRQEGKIQESLDLFQRTVQINPSNADNLKQVARSLFLLARHK 121
>SB_30727| Best HMM Match : DUF658 (HMM E-Value=0.39)
Length = 381
Score = 27.5 bits (58), Expect(2) = 1.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 572 KTRTRKQVSSHIQVLARRKLREIQAKL 652
+TR K V++H QVL ++++R +Q +L
Sbjct: 126 RTRGSKDVANHKQVLVQKQIRVLQNRL 152
Score = 21.8 bits (44), Expect(2) = 1.2
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +2
Query: 458 EALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 595
E L Y GR+ D + NEL+ R +L+ R R +V
Sbjct: 61 ELLTFYKVAGRKYNECFDLNNLQDINELMDREDQLKVDIARERMRV 106
>SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 266 ASGALAAGTIASPWSTPAGAPDTNGSGGADAKHLDVGDASDDEKDMSAAD 415
A+GA AG + +G NG G+D D D DD+ D +AAD
Sbjct: 87 AAGAAGAGAGGNVGGGGSGGVGGNGGSGSDDD--DDDDDDDDDDDAAAAD 134
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Frame = +2
Query: 413 DAEGVWSPDIEQSFQ---------EALAIYPPCGRRKIILSDEGKMYGRNELIA 547
DA+ +W PD +Q+FQ E LA+Y P +R+ I++ + G+ +L A
Sbjct: 2278 DAQWLWGPDQQQAFQRIKEVLASSEVLALYRP--KRETIIAADTSNAGKQQLTA 2329
>SB_48434| Best HMM Match : Phycoerythr_ab (HMM E-Value=3.1)
Length = 350
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 338 GSGGADAKHLDVGDASDDEKDMSAADAEGVWSPDIEQSFQEAL 466
G+ GAD + + D +DEK +S +G S DI+ + +AL
Sbjct: 301 GAKGADKTYSMIKDVLEDEKMISVYSLDGEISQDIDLAILKAL 343
>SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)
Length = 774
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 473 YPPCGRRKIILSDEGKMYGRNELIARYIKLRT 568
YP CG++ I+ S GK + R++ + R+++ T
Sbjct: 680 YPGCGKQTILGSTCGKSFTRSDELQRHLRTHT 711
>SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)
Length = 2056
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 377 DASDDEKDMSAADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYI 556
+ S +K +S+ A G W P ++QSFQ+ R I+ E + +ELIA +
Sbjct: 44 EVSRAKKRLSSIRAYGYWDPSLQQSFQKRK------DRAGSIVEKEKEQEDIDELIAEFS 97
Query: 557 K 559
K
Sbjct: 98 K 98
>SB_15433| Best HMM Match : Arm (HMM E-Value=9.7)
Length = 237
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 463 AGDIPALWTTQNYSLRRGQDVRK 531
A D P WT + SL RGQ +RK
Sbjct: 74 ASDGPTAWTAETMSLSRGQAMRK 96
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 532 PSVHLALVGENNFASSTGRVYRQRLLEALFDVG 434
P+V ++++ N+FAS+TG + +RL G
Sbjct: 500 PNVRISIIANNSFASNTGHLKFRRLFRRATSYG 532
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 302 PWSTPAGAPDTNGSGGADA 358
P TPA APD+ GS ADA
Sbjct: 764 PNETPAAAPDSEGSTSADA 782
>SB_53011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/66 (25%), Positives = 25/66 (37%)
Frame = +2
Query: 272 GALAAGTIASPWSTPAGAPDTNGSGGADAKHLDVGDASDDEKDMSAADAEGVWSPDIEQS 451
G+ G P ++ GAP G+ GD D M + EG+ + +EQ
Sbjct: 373 GSSGRGARTLPDNSEEGAPPNPGTKSPGPPKQSGGDGKLDPTGMKLLEPEGISTFRVEQD 432
Query: 452 FQEALA 469
LA
Sbjct: 433 LMRTLA 438
>SB_25852| Best HMM Match : Herpes_capsid (HMM E-Value=7)
Length = 284
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 506 SDEGKMYGRNELIARYIKLRTGKTRTRKQVSSH 604
SD GK+ E+ R + R GK KQ SSH
Sbjct: 78 SDSGKLSETQEVARRLSRTRLGKENAVKQNSSH 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,004,472
Number of Sequences: 59808
Number of extensions: 406705
Number of successful extensions: 1640
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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