Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30368
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    27   0.12 
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    25   0.64 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.5  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   6.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   6.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.0  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 649 YRSGEGEFTPHPVFAN-CSRVAY 584
           YR+GEG F P  + AN C+ V Y
Sbjct: 36  YRNGEGSFKPQNINANLCTHVHY 58


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 646 RSGEGEFTPHPVFAN-CSRVAY 584
           R G G+FTP  + AN C+ V Y
Sbjct: 34  RPGNGKFTPEDIDANLCTHVNY 55


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 544  WLKAHYMEAERLRGRPLGSSWQIPGEA*IPPP 639
            W K+   E ++   +P  SSWQ P +    PP
Sbjct: 1146 WPKSAKCEEKKPGHKPSTSSWQKPTKPSYRPP 1177



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 259  GQREATPPRDAPLPSFGFTQEQ 324
            GQ+E  PP D   PS    +E+
Sbjct: 1770 GQQETIPPIDEEPPSVEAVEEE 1791


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 280 GGWPPAAPTRGPPACP 233
           G  PP  P+ GPP+ P
Sbjct: 112 GNVPPLTPSPGPPSHP 127



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
 Frame = +3

Query: 240 AGGPRVGAAGGHPP*RRSPAEFWLYTGAGRLRLRGPSAGRQHRPAGEVPL-VAAGMRASS 416
           + GP     GG    +R   + WL + +G +    PS G    P   +    ++ M + S
Sbjct: 84  SSGPFSSIGGGISASKRQRTDDWLSSPSGNVPPLTPSPGPPSHPYTVISNGYSSPMSSGS 143

Query: 417 RPRVGAEGE-GHGRLPPGELQG 479
                  G+ G   L P  L G
Sbjct: 144 YDPYSPNGKIGREDLSPSSLNG 165


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 524 WLCALKLCDSSSLYSSLKFPRWKATMA 444
           W   L + + + +     FPRW+ T+A
Sbjct: 635 WSDMLSVGNMTLILDKFFFPRWRQTLA 661


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 376 GRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKEL 483
           GR +W+LP   ++ AH   LK K  +  HR  + ++
Sbjct: 670 GRLVWTLPGKTKMIAH---LKDKMKIR-HRKRWSQV 701


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 376 GRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKEL 483
           GR +W+LP   ++ AH   LK K  +  HR  + ++
Sbjct: 670 GRLVWTLPGKTKMIAH---LKDKMKIR-HRKRWSQV 701


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 376 GRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKEL 483
           GR +W+LP   ++ AH   LK K  +  HR  + ++
Sbjct: 670 GRLVWTLPGKTKMIAH---LKDKMKIR-HRKRWSQV 701


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 376 GRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKEL 483
           GR +W+LP   ++ AH   LK K  +  HR  + ++
Sbjct: 670 GRLVWTLPGKTKMIAH---LKDKMKIR-HRKRWSQV 701


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 376 GRFLWSLPACERLHAH 423
           GR +W+LP   ++ AH
Sbjct: 95  GRLVWTLPGKTKMIAH 110


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 376 GRFLWSLPACERLHAH 423
           GR +W+LP   ++ AH
Sbjct: 409 GRLVWTLPGKTKMIAH 424


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 376 GRFLWSLPACERLHAH 423
           GR +W+LP   ++ AH
Sbjct: 642 GRLVWTLPGKTKMIAH 657


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 376 GRFLWSLPACERLHAH 423
           GR +W+LP   ++ AH
Sbjct: 642 GRLVWTLPGKTKMIAH 657


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,762
Number of Sequences: 336
Number of extensions: 4192
Number of successful extensions: 21
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)