Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30368
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      34   0.019
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    29   0.92 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.5  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   6.5  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    25   8.6  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    25   8.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   8.6  

>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 487 RLLESHNFSAHNHAKLQSLWLKAHYMEAERLRGRPLG-SSWQIPGEA*IPPPQNDMGRRG 663
           +LL S  F    H ++ S + KAH  + E   G  L  S+  + GEA +PP +  +G+ G
Sbjct: 93  KLLNSSLFIEPLHGEIISRYSKAHLFDVEIKNGPTLKESNTTLRGEAILPPCKTPLGKVG 152

Query: 664 DLLLF 678
             + F
Sbjct: 153 SAICF 157


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -1

Query: 539 LCSFAWLCALKLCDSSSLYSSLKFPRWKATMAFAFSTDSWA 417
           +C FAW CAL  C   S + S  F R  A   F FS   W+
Sbjct: 92  MCHFAWSCALP-CFVDSFFPSNFFLRTYA--LFTFSLQLWS 129


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +3

Query: 276 PP*RRSPAEFWLYTGAGRLRLRGPSAGRQHRPAGEVPLVAAGMRASSRPRVGAEGEGHGR 455
           PP RR+  +  +  G+    L  P    +   AG +PL   G R++  P         GR
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG-RSAPPPPPPRSAPSTGR 374

Query: 456 LPP 464
            PP
Sbjct: 375 QPP 377


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 259 GQREATPPRDA--PLPSFGFTQEQVACVCEVLQQAGNIDRLGRF 384
           G+++  P + A   L S G T + +AC C+   +   ID++  F
Sbjct: 188 GEQKTKPTQQAIRDLRSLGITPDLIACRCKQPLEKSVIDKISLF 231


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 280 GGWPPAAPTRGPPACPDARP 221
           GG P AAP   P A P A P
Sbjct: 616 GGMPGAAPGAAPGAAPGAAP 635


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 656 GEETSYCFKEKSRSVLRDWYLHNP 727
           GE+  Y    K+  VLRDW L  P
Sbjct: 73  GEKLVYVLYPKNAQVLRDWDLWGP 96


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
 Frame = +3

Query: 270  GHPP*RRSPAEFWLYTGAGRLRLRGPSAGRQHRPAGEVPLVAAGMRASSRPR---VGAEG 440
            G PP  +S     L TG      RGP    Q++PA   P+     ++   P    V    
Sbjct: 961  GLPPTSKSKPFPRLATGGSTAAARGPRPVVQNKPAATKPVSMPAAKSKPAPMANPVSTAQ 1020

Query: 441  EGHGRLPPGELQ---GTVQAAGVAQLQRTQPRKA 533
            +   R P   +Q    T QAA       T  ++A
Sbjct: 1021 QTQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQA 1054


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,218
Number of Sequences: 5004
Number of extensions: 67505
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)