Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30368
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37035| Best HMM Match : Homeobox (HMM E-Value=9.6e-09) 146 2e-35
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 4e-31
SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 2e-30
SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 3e-19
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_40648| Best HMM Match : DUF646 (HMM E-Value=6.9) 35 0.080
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 31 0.99
SB_29835| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_9177| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.9) 30 1.7
SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 30 2.3
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_40356| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_14407| Best HMM Match : DUF646 (HMM E-Value=5) 29 4.0
SB_17241| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_14911| Best HMM Match : Amelogenin (HMM E-Value=1.7) 29 4.0
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_27175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_37035| Best HMM Match : Homeobox (HMM E-Value=9.6e-09)
Length = 243
Score = 146 bits (354), Expect = 2e-35
Identities = 64/107 (59%), Positives = 85/107 (79%), Gaps = 4/107 (3%)
Frame = +1
Query: 289 APLPSFGFTQEQVACVCEVLQQAGNIDRLGRFLWSLPAC----ERLHAHESVLKAKAMVA 456
APLP+ F+ Q+A VCE L+++G+++RL RFLWSLP E L HESVL+A+A+VA
Sbjct: 3 APLPALSFSAHQIAQVCETLEESGDVERLARFLWSLPVAPGTLEALGKHESVLRARAIVA 62
Query: 457 FHRGNFKELYRLLESHNFSAHNHAKLQSLWLKAHYMEAERLRGRPLG 597
FH GNF++LY +LE+H F+ +HAKLQ++WL+AHY EAERLRGRPLG
Sbjct: 63 FHMGNFRDLYHILETHRFTRESHAKLQAMWLEAHYQEAERLRGRPLG 109
Score = 89.4 bits (212), Expect = 3e-18
Identities = 34/48 (70%), Positives = 44/48 (91%)
Frame = +2
Query: 596 GAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYLHNPYPSP 739
G V KYRVR+KFPLPRTIWDGE+ ++CFKE++RS+LR+WYL +PYP+P
Sbjct: 109 GPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNP 156
>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2250
Score = 132 bits (318), Expect = 4e-31
Identities = 57/100 (57%), Positives = 78/100 (78%)
Frame = +1
Query: 301 SFGFTQEQVACVCEVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKE 480
+ F+ +QVACVC+ L+QAG+I+RL RFLWSLP + L+ ESVLKA+A+V+FHRG ++E
Sbjct: 16 TLAFSADQVACVCDALRQAGDIERLSRFLWSLPPDDLLNGSESVLKARAIVSFHRGRYRE 75
Query: 481 LYRLLESHNFSAHNHAKLQSLWLKAHYMEAERLRGRPLGS 600
+Y +LE++ F +H LQ LW KAHY EAE+LRGR LG+
Sbjct: 76 VYNILETNEFDPSSHELLQCLWYKAHYSEAEKLRGRSLGA 115
Score = 87.8 bits (208), Expect = 8e-18
Identities = 36/49 (73%), Positives = 42/49 (85%)
Frame = +2
Query: 596 GAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYLHNPYPSPR 742
GAV KYR+RRKFPLPRTIWDGEET YCFKEK+R+ L+D Y N YP+P+
Sbjct: 114 GAVDKYRIRRKFPLPRTIWDGEETVYCFKEKARAALKDCYEQNKYPTPQ 162
>SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 130 bits (313), Expect = 2e-30
Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 2/102 (1%)
Frame = +1
Query: 301 SFGFTQ-EQVACVCEVLQQAGNIDRLGRFLWSLPA-CERLHAHESVLKAKAMVAFHRGNF 474
SFG T + + VCE LQ +GNI+RL RFLWSLP E +HA E++L AKA+VAFH+ NF
Sbjct: 59 SFGNTSIDHIISVCECLQNSGNIERLARFLWSLPKDSEEIHACETILVAKAVVAFHQNNF 118
Query: 475 KELYRLLESHNFSAHNHAKLQSLWLKAHYMEAERLRGRPLGS 600
KELY +LES F H KLQ LW AHY+EAER+RGRPLG+
Sbjct: 119 KELYSILESRKFQRSEHEKLQCLWRTAHYIEAERVRGRPLGA 160
Score = 95.9 bits (228), Expect = 3e-20
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = +2
Query: 596 GAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYLHNPYPSPR 742
GAVGKYRVRRKFPLPRTIWDGEET+YCFKEKSRS+L Y+ +PYP+PR
Sbjct: 159 GAVGKYRVRRKFPLPRTIWDGEETTYCFKEKSRSILNKAYVDSPYPTPR 207
>SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1062
Score = 92.7 bits (220), Expect = 3e-19
Identities = 42/87 (48%), Positives = 61/87 (70%)
Frame = +1
Query: 340 EVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAH 519
++ + G+I RL +FL S+P + + ES+LKA+AMVAFHRG ++E+Y +LE++ F
Sbjct: 750 QLADKEGDIKRLSQFLLSIPQEDLQNKSESLLKARAMVAFHRGCYQEVYNILENNKFDTS 809
Query: 520 NHAKLQSLWLKAHYMEAERLRGRPLGS 600
+H LQ LW KAHY E E+LRGR L +
Sbjct: 810 SHEFLQCLWYKAHYSEGEKLRGRSLSA 836
Score = 62.1 bits (144), Expect = 5e-10
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = +2
Query: 599 AVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYLHNPYPS 736
AV K+R+R+K PLP TI DGE+T Y FKEK R+VL++ Y H YP+
Sbjct: 836 AVDKFRIRKKSPLPNTISDGEKTIYFFKEKVRTVLKECYEHKKYPT 881
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +1
Query: 373 LGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLK 552
L FL +LP E+ E++ +++A + F R + LY+LL+ + F+ + L LW
Sbjct: 43 LEMFLSTLPNTEKYKTEEALNRSRAYLEFQRKRYGNLYQLLKGNTFT--DAEDLVKLWDA 100
Query: 553 AHYMEAERLRGRPL 594
AHY E + +PL
Sbjct: 101 AHYEEERAKKRKPL 114
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +2
Query: 602 VGKYRVRRKFPLPRTIW-DGEETSYCFKEKSRSVLRDWY---LHNPYP 733
+ K+R+R++F P+TI G + S KE +R +L+ W L PYP
Sbjct: 117 LAKFRIRQRFTPPKTICPKGRQKSTLPKEATR-ILQSWLNDNLEKPYP 163
>SB_40648| Best HMM Match : DUF646 (HMM E-Value=6.9)
Length = 218
Score = 34.7 bits (76), Expect = 0.080
Identities = 36/121 (29%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Frame = +3
Query: 114 SDIQIRNSKLIKLD--IRDATDVTALSAVV*NSRQSGWGRASGHAGGPRVGAAGGHPP*R 287
SD+ I ++ + ++ ATD L A N+ G + G PRV A H P R
Sbjct: 51 SDLVINTQSVVGYNNKLQKATDSMKLGANAINTETKPVGAHNMAGGHPRVQHATDHVPPR 110
Query: 288 RSPAEFWLYTGAGRLRLRGPSAGRQHRPAGEVPLVAAGMRASSRPRVGAEGEGHGRLPPG 467
R A ++ G +A RP G VP A R ++ G E H L PG
Sbjct: 111 RQSA-------PAKVHAEGAAAPDLGRPPGAVP---ASARQAAHSTSG-EKSDHTALKPG 159
Query: 468 E 470
E
Sbjct: 160 E 160
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 32.7 bits (71), Expect = 0.32
Identities = 33/103 (32%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Frame = +3
Query: 216 GWGR---ASGHAGGPR---VGAAGGHPP*RRSPAEFWLYTGAGRLRLRGPSAGRQHRPAG 377
GWG+ +G GGP G GG PP + W G + GP + G
Sbjct: 489 GWGQPPPGAGQGGGPPPPGAGQGGGPPP--PGAGQGWGQPPPGAGQGGGPPPPGAGQGGG 546
Query: 378 EVPLVAAGMRASSRPRVGAEGEGHGRLPPGELQGTVQAAGVAQ 506
P AG + +P GA G+G G PPG QG G Q
Sbjct: 547 PPP-PGAG-QGWGQPPPGA-GQGGGPPPPGAGQGGPPPPGAGQ 586
>SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1521
Score = 31.5 bits (68), Expect = 0.75
Identities = 34/121 (28%), Positives = 47/121 (38%), Gaps = 2/121 (1%)
Frame = +3
Query: 114 SDIQIRNSKLIKLD--IRDATDVTALSAVV*NSRQSGWGRASGHAGGPRVGAAGGHPP*R 287
SD+ I ++ + ++ ATD L A N+ G + G PRV A H P R
Sbjct: 352 SDLVINTQSVVGYNNKLQKATDSMKLGANAINTETKPVGAHNMSGGHPRVQHATDHVPPR 411
Query: 288 RSPAEFWLYTGAGRLRLRGPSAGRQHRPAGEVPLVAAGMRASSRPRVGAEGEGHGRLPPG 467
R A ++ G +A AG VP AA + + A G L PG
Sbjct: 412 RQSA-------PAKVHAEG-AAAPDRGGAGAVPAAAAHSTSGEKSDHTALKAGLSALAPG 463
Query: 468 E 470
E
Sbjct: 464 E 464
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 358 RPAEGPRKRRRPAPV*SQNSAGERL*GGWPPAAPTRGPPACPDARPQP 215
RP P++++ P +AG GG P P PP PD P+P
Sbjct: 196 RPGVPPQQQQMPQQPPVSTAAGTGR-GGTVPPTPATAPPPNPDGTPRP 242
>SB_29835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 31.1 bits (67), Expect = 0.99
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = +3
Query: 114 SDIQIRNSKLIKLD--IRDATDVTALSAVV*NSRQSGWGRASGHAGGPRVGAAGGHPP*R 287
SD+ I ++ + ++ ATD L A N+ G + G PRV A H P R
Sbjct: 492 SDLVINTQSVVGYNNKLQKATDSMKLGANAINTETKPVGAHNMAGGHPRVQHATDHVPPR 551
Query: 288 RSPAEFWLYTGAGRLRLRG--PSAGRQ--HRPAGE 380
R A ++ A L G P++ RQ H +GE
Sbjct: 552 RQSAPTKVHAAAPDLGGAGAVPASARQAAHSTSGE 586
>SB_9177| Best HMM Match : PPI_Ypi1 (HMM E-Value=1.9)
Length = 121
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 621 GVNSPSPERYGTERRPLTVLRKSPDPSSATGIST 722
G ++ +P R E + +RKS +P SATGIS+
Sbjct: 63 GDSNTTPRRVAYESSVIDAMRKSIEPPSATGISS 96
>SB_5808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 531 LCVVVCAEVVRLQQPVQFLEVPPVEGDHGLRLQHRLVGVKTLACRQRPEEPPQPVYVAGL 352
+CV++C E VQ + PP + G Q +G+ + ++PE +PV
Sbjct: 184 ICVLICIEAGSSTTDVQKNKAPPQKSKKG---QLPTMGMFAVKTEKKPEPKAEPVKPPET 240
Query: 351 LK-DLANAGDLLLCKAKTRQG 292
K D +N+G +L K G
Sbjct: 241 KKQDKSNSGGMLSFFGKPTAG 261
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +3
Query: 108 NKSDIQIRNSKLIKLDIRDATDVTALSAVV*NSRQSGWGRASGHAGGPRVGAAG 269
NK+ Q N + I DA A AV + R SG GR+S GG R G+ G
Sbjct: 25 NKNSPQDYNGQRTAQGIVDAAMRAAQEAV--SQRMSGGGRSSSGGGGRRGGSGG 76
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 29.5 bits (63), Expect = 3.0
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = -2
Query: 424 RGREDARMPAATRGT--SPAGLCCRPA-EGPRKRRRPAPV*SQNSAGERL*GGWPPAAPT 254
RG R P+ RG +P G R EGP + PV G R G P T
Sbjct: 413 RGSSGPRTPSPDRGRQRTPEGAAGRYYDEGPDDKLE-YPVKGGRGRGPRTPPGDPTYEHT 471
Query: 253 RGPPACPDARP 221
RGPP ARP
Sbjct: 472 RGPPPERHARP 482
>SB_40356| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 114 SDIQIRNSKLIKLD--IRDATDVTALSAVV*NSRQSGWGRASGHAGGPRVGAAGGHPP*R 287
SD+ I ++ + ++ ATD L A N+ G + G PRV A GH P R
Sbjct: 428 SDLVINTQSVVGYNNKLQKATDSMKLGANAINTETKPVGAHNMAGGHPRVQHATGHVPPR 487
Query: 288 RSPA 299
R A
Sbjct: 488 RQSA 491
>SB_14407| Best HMM Match : DUF646 (HMM E-Value=5)
Length = 214
Score = 29.1 bits (62), Expect = 4.0
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Frame = +3
Query: 114 SDIQIRNSKLIKLD--IRDATDVTALSAVV*NSRQSGWGRASGHAGGPRVGAAGGHPP*R 287
SD+ I ++ + ++ ATD L A N+ G + G PRV A H P R
Sbjct: 92 SDLVINTQSVVGYNNKLQKATDSMKLGANAINTETKPVGAHNMAGGHPRVQHATDHVPPR 151
Query: 288 RSPAEFWLYT-GA-----GRLRLRGPSAGRQ--HRPAGE 380
R A ++ GA GRL P++ RQ H +GE
Sbjct: 152 RQSATAKVHAEGAAAPDLGRLPGAVPASARQAAHSTSGE 190
>SB_17241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 621 GVNSPSPERYGTERRPLTVLRKSPDPSSATGISTTRILR 737
G ++ +P R E + +RKS +P ATGIS + R
Sbjct: 63 GDSNTTPRRVAYESSVIDAMRKSIEPPPATGISDYELAR 101
>SB_14911| Best HMM Match : Amelogenin (HMM E-Value=1.7)
Length = 326
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -2
Query: 385 GTSPAGLCCRPAEGP-RKRRRPAPV*SQNSAGERL*GGWPPAAPTRGPPACPD 230
GT P G GP R PA + A ERL PPA+P + A PD
Sbjct: 142 GTVPVGRTGTDRTGPSRSSDLPASSRPTSRASERLISTRPPASPPKPGRASPD 194
>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +3
Query: 348 SAGRQHRPAGEVPLVAAGMRASSRPRVGAEGEGHGRLPPGELQGTVQAAGVAQLQRTQPR 527
S G H PA PL A+ +++ R + EGH EL GT A +T P
Sbjct: 514 STGSNHYPASPAPLPASPTAFNNKTRTEVQEEGH------ELTGTSTAPRGKAQHKTIPI 567
Query: 528 K 530
K
Sbjct: 568 K 568
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = +3
Query: 249 PRVGAAGG-HP--P*RRSPAEFWLYTGAGRLRLRGPSAGRQHRPAGEVPLVAAGMRASSR 419
PRV + G HP P +P GA R+R P A P P +
Sbjct: 389 PRVPSPGASHPRVPPPGAPHPRVPPPGASHQRVRPPGAPHPRVPPPGAPHPRFPPPGAPH 448
Query: 420 PRVGAEGEGHGRLPP 464
PRV G H R+PP
Sbjct: 449 PRVPPPGAPHPRVPP 463
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 27.9 bits (59), Expect = 9.2
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Frame = -2
Query: 421 GREDARMPAATRGTSPAGLCCRPAEGPRKRRRPAPV*SQNSAG-------ERL*GGWPPA 263
G + A P T+P G RP P R + APV S AG E PPA
Sbjct: 234 GPKPAVKPRDRLATAPPG---RPP-APHTREKIAPVPSSKPAGTKEPAKDEESQQSKPPA 289
Query: 262 APTRGPP 242
A RGPP
Sbjct: 290 AAARGPP 296
>SB_27175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1720
Score = 27.9 bits (59), Expect = 9.2
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Frame = +3
Query: 111 KSDIQIRNSKLIKLD--IRDATDVTALSAVV*NSRQSGWGRASGHAGGPRVGAAGGHPP* 284
+SD+ I+ ++ + ++ ATD L A N+ G + G PRV A H P
Sbjct: 571 QSDLVIKTQSVVGYNNKLQKATDSMKLGANAINTETKPVGAHNMAGGHPRVQHATDHAPP 630
Query: 285 RRSPAEFWLYTGAGRLRLRGPSAGRQHRPAGEVPLVAA 398
RR +++ L G + G LV A
Sbjct: 631 RRQSTPAKVHSEGAAPTLSGGKSDHTALKVGLSVLVVA 668
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,346,810
Number of Sequences: 59808
Number of extensions: 606548
Number of successful extensions: 2035
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2021
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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