Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30368
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70857-9|AAB09174.1| 261|Caenorhabditis elegans C.elegans homeo... 108 4e-24
U70857-8|AAB09173.2| 256|Caenorhabditis elegans C.elegans homeo... 96 3e-20
Z77670-4|CAB01249.2| 439|Caenorhabditis elegans Hypothetical pr... 87 1e-17
AF325178-1|AAG49583.1| 439|Caenorhabditis elegans CEH-32 protein. 87 1e-17
Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical pr... 58 5e-09
U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related... 33 0.28
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 6.1
U64601-8|AAB04576.2| 413|Caenorhabditis elegans Hypothetical pr... 28 6.1
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 28 6.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 6.1
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina... 28 6.1
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul... 28 6.1
Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr... 28 8.0
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 28 8.0
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 28 8.0
AF039048-6|AAB94235.1| 91|Caenorhabditis elegans Hypothetical ... 28 8.0
>U70857-9|AAB09174.1| 261|Caenorhabditis elegans C.elegans homeobox
protein 33 protein.
Length = 261
Score = 108 bits (260), Expect = 4e-24
Identities = 45/97 (46%), Positives = 72/97 (74%)
Frame = +1
Query: 310 FTQEQVACVCEVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYR 489
+++EQVAC+CE L + + +L +F+W++ + + ++ +LKA+A +AFH NFKELYR
Sbjct: 20 YSEEQVACICEAL--SNDARKLSQFVWTVLERDEMRNNQYILKAQAFLAFHSNNFKELYR 77
Query: 490 LLESHNFSAHNHAKLQSLWLKAHYMEAERLRGRPLGS 600
++ESH+F++ +H LQ WL AHY EAE++RGR LG+
Sbjct: 78 IIESHHFASEHHLPLQEWWLNAHYHEAEKIRGRQLGA 114
Score = 99 bits (238), Expect = 2e-21
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = +2
Query: 596 GAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYLHNPYPSPR 742
GAVGKYR+RRK+PLPRTIWDGEETSYCF++KSR +LRDWY N YPSPR
Sbjct: 113 GAVGKYRIRRKYPLPRTIWDGEETSYCFRDKSRVLLRDWYCRNSYPSPR 161
>U70857-8|AAB09173.2| 256|Caenorhabditis elegans C.elegans homeobox
protein 34 protein.
Length = 256
Score = 95.9 bits (228), Expect = 3e-20
Identities = 46/111 (41%), Positives = 72/111 (64%), Gaps = 4/111 (3%)
Frame = +1
Query: 280 PRDAPLPSFGFTQEQVACVCEVL----QQAGNIDRLGRFLWSLPACERLHAHESVLKAKA 447
P+++ + ++++++ C+CE L Q G ++L F+++LP C ++ ESVLKA+A
Sbjct: 7 PQNSLTATTSYSEQEIVCICESLFNEGLQTGRTEQLANFIYNLPQCYQVM--ESVLKAQA 64
Query: 448 MVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLKAHYMEAERLRGRPLGS 600
+V F N+K LY+LLE FS HNH LQ+LWL AHY EA + + R LG+
Sbjct: 65 LVYFTTQNWKMLYKLLECSKFSPHNHTVLQNLWLDAHYKEAAKTKDRELGA 115
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/47 (70%), Positives = 37/47 (78%)
Frame = +2
Query: 596 GAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYLHNPYPS 736
GAV KYR+R+K P P TIWDGEET+YCFK KSR+VLRD Y YPS
Sbjct: 114 GAVCKYRIRKKNPFPNTIWDGEETNYCFKSKSRNVLRDAYKKCQYPS 160
>Z77670-4|CAB01249.2| 439|Caenorhabditis elegans Hypothetical
protein W05E10.3 protein.
Length = 439
Score = 87.0 bits (206), Expect = 1e-17
Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Frame = +1
Query: 313 TQEQVACVCEVLQQAGNIDRLGRFLWSLPA--CERLHAHESVLKAKAMVAFHRGNFKELY 486
T +Q+ CE L+ G++D L RF+ ++P + + +E+ L+A+A+V FH +F+ELY
Sbjct: 69 TADQIVKTCEQLETDGDVDGLFRFMCTIPPQKTQEVAGNEAFLRARALVCFHASHFRELY 128
Query: 487 RLLESHNFSAHNHAKLQSLWLKAHYMEAERLRGRPL 594
+LE++ FS H KLQ +W +AHY E E+ RG+ L
Sbjct: 129 AILENNKFSPKYHPKLQEMWHEAHYREQEKNRGKSL 164
Score = 86.6 bits (205), Expect = 2e-17
Identities = 32/47 (68%), Positives = 44/47 (93%)
Frame = +2
Query: 599 AVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYLHNPYPSP 739
AV KYRVR+K+P+PRTIWDGE+ ++CFKE++RS+LR+WYL +PYP+P
Sbjct: 166 AVDKYRVRKKYPMPRTIWDGEQKTHCFKERTRSLLREWYLKDPYPNP 212
>AF325178-1|AAG49583.1| 439|Caenorhabditis elegans CEH-32 protein.
Length = 439
Score = 87.0 bits (206), Expect = 1e-17
Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Frame = +1
Query: 313 TQEQVACVCEVLQQAGNIDRLGRFLWSLPA--CERLHAHESVLKAKAMVAFHRGNFKELY 486
T +Q+ CE L+ G++D L RF+ ++P + + +E+ L+A+A+V FH +F+ELY
Sbjct: 69 TADQIVKTCEQLETDGDVDGLFRFMCTIPPQKTQEVAGNEAFLRARALVCFHASHFRELY 128
Query: 487 RLLESHNFSAHNHAKLQSLWLKAHYMEAERLRGRPL 594
+LE++ FS H KLQ +W +AHY E E+ RG+ L
Sbjct: 129 AILENNKFSPKYHPKLQEMWHEAHYREQEKNRGKSL 164
Score = 86.6 bits (205), Expect = 2e-17
Identities = 32/47 (68%), Positives = 44/47 (93%)
Frame = +2
Query: 599 AVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYLHNPYPSP 739
AV KYRVR+K+P+PRTIWDGE+ ++CFKE++RS+LR+WYL +PYP+P
Sbjct: 166 AVDKYRVRKKYPMPRTIWDGEQKTHCFKERTRSLLREWYLKDPYPNP 212
>Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical
protein F56A12.1 protein.
Length = 335
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Frame = +2
Query: 602 VGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYLH-NPYPS 736
V KYR+RRKFP P+TIWDGEE Y FK+ SR L+ ++ + + YP+
Sbjct: 199 VEKYRLRRKFPAPKTIWDGEEIVYSFKDSSRKFLKQFFRNVSEYPT 244
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Frame = +1
Query: 295 LPSFG-----FTQEQVACVCEVLQQAGNIDRLGRF------LWSLPACERLHAHESVLKA 441
+P+FG ++ EQ+ + L QA + DRL F L+ A + L + E+++ A
Sbjct: 87 IPAFGCTMSEYSMEQMEAISTSLFQARDGDRLVAFFKQLESLYGPNAVDHLRS-EAIIVA 145
Query: 442 KAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLKAHYMEAERLRGRPL 594
+H F+ L+ LL + +F ++ LQ +W A Y E++ RG+ L
Sbjct: 146 YTYALYHSNEFETLFHLLSNRHFQQRHYNDLQDIWHHARYKESQLKRGKEL 196
>U28733-1|AAA68302.2| 982|Caenorhabditis elegans Patched related
family protein 6 protein.
Length = 982
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 536 CSFAWLCALKLCDSSSLYSSLKFPRWKATMAFA 438
C F W+ L L D+ LY+ + P WK F+
Sbjct: 44 CGFYWIKELTLLDARKLYTPVSAPSWKEEQVFS 76
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Frame = -2
Query: 400 PAATRGTSPAGLCCRPAEGPRKRRRPAPV*SQNSA---GERL*GGWPPAAPTRGPPACPD 230
P R P G+ P P R P + G R GG PP P R P A P
Sbjct: 302 PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPG 361
Query: 229 ARPQP 215
P P
Sbjct: 362 MYPPP 366
>U64601-8|AAB04576.2| 413|Caenorhabditis elegans Hypothetical
protein M03F4.6 protein.
Length = 413
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 420 GVKTLACRQRPEEPPQPVYVAGLLKDLANAGD 325
G K+ C RP P P+YV G +A+ GD
Sbjct: 258 GWKSSLCCPRPCRDPTPLYVNGQCLSIAHRGD 289
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/67 (35%), Positives = 27/67 (40%)
Frame = -2
Query: 421 GREDARMPAATRGTSPAGLCCRPAEGPRKRRRPAPV*SQNSAGERL*GGWPPAAPTRGPP 242
GR R P+ G PAG PA + P P Q GE+ G P AA GPP
Sbjct: 141 GRPGPRGPSGLVG--PAG----PAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGRPGPP 194
Query: 241 ACPDARP 221
P P
Sbjct: 195 G-PRGEP 200
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Frame = -2
Query: 400 PAATRGTSPAGLCCRPAEGPRKRRRPAPV*SQNSA---GERL*GGWPPAAPTRGPPACPD 230
P R P G+ P P R P + G R GG PP P R P A P
Sbjct: 312 PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPG 371
Query: 229 ARPQP 215
P P
Sbjct: 372 MYPPP 376
>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
receptor T17A3.1 protein.
Length = 1083
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Frame = +1
Query: 292 PLPSFGFTQEQVACVCEVLQQAGNIDRLGRFLWSLPACE-RLHAHESVLKAKAMVAFHRG 468
P P G+ + C ++ GN +LG + P C+ RL H + K H
Sbjct: 254 PFPHVGYNFS-LTCHLVYIEPNGNAPKLGELAFECPQCQSRLDNHLVIEK------HHNV 306
Query: 469 NFKELYRLLESHNFSAHNHAKLQSLWLK 552
K L + N + K + +W K
Sbjct: 307 GRKRLSSAIHIKNLQLRDAGKYRCIWKK 334
>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 1
protein.
Length = 1083
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Frame = +1
Query: 292 PLPSFGFTQEQVACVCEVLQQAGNIDRLGRFLWSLPACE-RLHAHESVLKAKAMVAFHRG 468
P P G+ + C ++ GN +LG + P C+ RL H + K H
Sbjct: 254 PFPHVGYNFS-LTCHLVYIEPNGNAPKLGELAFECPQCQSRLDNHLVIEK------HHNV 306
Query: 469 NFKELYRLLESHNFSAHNHAKLQSLWLK 552
K L + N + K + +W K
Sbjct: 307 GRKRLSSAIHIKNLQLRDAGKYRCIWKK 334
>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
protein ZK524.4 protein.
Length = 1016
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = -1
Query: 299 GRGASLGGVASRCPHSGPPSMSRCSSPATLTTVSHYST*RRDVSRVTN 156
GR AS V S S P S S +SPA ++T+S S + S VTN
Sbjct: 596 GRAASPESVRSSRSPSPPASSSGRTSPA-MSTISSMSRLKVSASNVTN 642
>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
protein ZK524.4 protein.
Length = 1016
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = -1
Query: 299 GRGASLGGVASRCPHSGPPSMSRCSSPATLTTVSHYST*RRDVSRVTN 156
GR AS V S S P S S +SPA ++T+S S + S VTN
Sbjct: 596 GRAASPESVRSSRSPSPPASSSGRTSPA-MSTISSMSRLKVSASNVTN 642
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 207 RQSGWGRASGHAGGPRVGAAGG 272
R GWGR GGP G GG
Sbjct: 39 RSGGWGRPGWGGGGPGWGRGGG 60
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 27.9 bits (59), Expect = 8.0
Identities = 34/116 (29%), Positives = 42/116 (36%), Gaps = 6/116 (5%)
Frame = +3
Query: 213 SGWGRASGHAGGPRVGAAGGHPP*RRSPAEFWLYTGAGRLRLRGP-----SAGRQHRPAG 377
SG G AS P G PP P + +G G R P + P G
Sbjct: 118 SGEGNASRRPPPPPKGTGSPPPPPTGEPQDL---SGEGNASRRPPPPPKGTGSPPPPPTG 174
Query: 378 EVPLVAAGMRASSRPRVGAEGEGHGRLPP-GELQGTVQAAGVAQLQRTQPRKAAES 542
E ++ AS RP +G G PP GE Q + A G A + P K S
Sbjct: 175 EPQDLSTEGNASRRPPPPPKGTGTPPPPPTGEPQ-DLSAEGYASRRPPPPPKGTGS 229
>AF039048-6|AAB94235.1| 91|Caenorhabditis elegans Hypothetical
protein F16B4.4 protein.
Length = 91
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +3
Query: 180 ALSAVV*NSRQSGWGRASGHAGGPR--VGAAGGH 275
A++AVV N+ G+GR +G G P GA GG+
Sbjct: 9 AIAAVVVNAYPGGYGRPAGGYGPPSGGYGAPGGY 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,213,862
Number of Sequences: 27780
Number of extensions: 433411
Number of successful extensions: 1411
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -